1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgactgctaattgcattttttgtttttttctgcatccattattgttgtctttatgtagctttcttttcttctttcattcaagggtatttatcaagacatgtaaaattagtgcccttttatatgtacagtttctgatgttcatcttttttggcagTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCT
species | Glycine max |
transcript | GLYMA11G15470.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGAAAGAATGAAACGTTTGCTTGATAATTTGCAGAAGAAACTTGATGAG TCTTTCTTAAACATGCAGEST: gi|11687562|gb|BF595238.1|BF595238
genomic: CAGAAAGAATGAAACGTTTGCTTGATAATTTGCAGAAGAAACTTGATGAGgtttgactgc ... tttttggcagTCTTTCTTAAACATGCAG
EST: TGATAATTTGCAGAAGAAACTTGATGAG TCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATEST: gi|13789994|gb|BG652585.1|BG652585
genomic: TGATAATTTGCAGAAGAAACTTGATGAGgtttgactgc ... tttttggcagTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGAT
EST: CAGAAAGAATGAAACGTTTGCTTGATAATTTGCACAAGAAACTTGATGAG TCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATEST: gi|10232648|gb|BE801536.1|BE801536
genomic: CAGAAAGAATGAAACGTTTGCTTGATAATTTGCAGAAGAAACTTGATGAGgtttgactgc ... tttttggcagTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGAT
EST: CAGAAAGAATGAAACGTTTGCTTGATAATTTGCAGAAGAAACTTGATGAG TCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGAT
genomic: CAGAAAGAATGAAACGTTTGCTTGATAATTTGCAGAAGAAACTTGATGAGgtttgactgc ... tttttggcagTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGAT
gtaaaattagtgcccttttatatgtacagtttctgatgttcatcttttttggcagTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCT
ttctgat putative branch site (score: 3)
tgttcatctttttt CT-rich tract
ttttatatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgactgctaattgcattttttgtttttttctgcatccattattgttgtctttatgtagctttcttttcttctttcattcaagggtatttatcaagacatgtaaaattagtgcccttttatatgtacagtttctgatgttcatcttttttggcagTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG