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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttcatattcacacattagggtacgatttgtgattatggaatatggctaacgtgaaaatgtttgcagGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAGGATGGCACAACCAACATAACTTGCATTGACCTTTCACCTGTTGCAGTTC

Basic information

species Glycine max
transcript GLYMA11G12910.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182183|gb|HO026358.1|HO026358
EST:     ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCT                         GTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
genomic: ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTgtatgcttca ... atgtttgcagGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
EST: gi|10847982|gb|BF070555.1|BF070555
EST:     ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCT                         GTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
genomic: ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTgtatgcttca ... atgtttgcagGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
EST: gi|298173135|gb|HO020119.1|HO020119
EST:     ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCT                         GTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACTGTTGCATAAG
genomic: ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTgtatgcttca ... atgtttgcagGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
EST: gi|7145881|gb|AW507803.1|AW507803
EST:     ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCT                         GTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG
genomic: ATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTgtatgcttca ... atgtttgcagGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattagggtacgatttgtgattatggaatatggctaacgtgaaaatgtttgcagGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAGGATGGCACAACCAACATAACTTGCATTGACCTTTCACCTGTTGCAGTTC
                                ggctaac  putative branch site (score: 2)
                                          aaaatgttt  TA-rich tract