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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttcttttacctttttatttttaattgatcttatgttttcattgtgttattcaatggttgaatttgacattgcatttgtttgtgatctttttcttttccagGTTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG

Basic information

species Glycine max
transcript GLYMA11G12610.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12610.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 2
gtttttcttttacctttttatttt-taattgatcttatgttttcattgtgttattcaatggttgaatttgacattgc---atttgtttgtgatctttttcttttccagGTTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG
  |    || | ||   ||||| | |  ||||  || | || ||  | | |  | |     | ||| ||||   | |    | | ||| |  | | ||    |||||||| || ||||| ||| | || ||| ||||||| ||||||||||||||||||
-gtaagtttatgccaccttattctgtggttgaatttgttttctctgtttttcttccttatttggaaattgattcttctgggtctttttttattgtattctcattccagGTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529501|gb|EH257635.1|EH257635
EST:     AGGCCAGGGTTTTTAATGACCCACAGCTAGATGCTAGGAGATGTTCACAG                         GTTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG
genomic: AGGCCAGGGTTTTTAATGACCCACAGCTAGATGCTAGGAGATGTTCACAGgtttttcttt ... tcttttccagGTTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG
EST: gi|208245126|gb|GE039896.1|GE039896
EST:     AGGCCAGGGTTTTTAATGACCCACAGCTAGATGCTAGGAGATGTTCACAG                         GTTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG
genomic: AGGCCAGGGTTTTTAATGACCCACAGCTAGATGCTAGGAGATGTTCACAGgtttttcttt ... tcttttccagGTTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcaatggttgaatttgacattgcatttgtttgtgatctttttcttttccagGTTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG
               atttgac  putative branch site (score: 4)
                                tttgtgatctttttct  putative PPT
                                         tttttctttt  TA-rich tract