Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgcagtcaattcgttggctttagttttttataattaaacacaaaatgtatttgttgtgttgaaagttctcttaatgttttgtcttatgctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG

Basic information

species Glycine max
transcript GLYMA11G12180.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12180.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os10g34180.1 (Oryza sativa), 3'ss of exon 2
tttgcagtcaattcgttggctttagttttttataattaaacacaaaat---gtatttgttgtgttgaaagttctctta----atgttttgtcttatgctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG
     ||  |    ||     ||| |   |  | | ||  ||  |  |    || | ||  ||||   | |    |||    ||| |  || || || | |    |||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||| ||| |||| || ||  ||||||| |  ||||| |||
-----agaaaggatgt--atattactcactactcactagtcatgatgtttcatactagtgctgttaggattctaattatgatatgataagttttgtgttggtgacagAAAGAAGAAGGCAGTCCATAAGACTACAACCACAGATGACAAAAGACTTCAGAGCACTCTGAAAAGAGTAGGAGTAAACACCATCCCTGGCATTGAAGAG

upper sequence: GLYMA11G12180.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g01910.1 (Oryza sativa), 3'ss of exon 2
--tttgcagtcaattcgttggctttagttttttataatt-aaacacaaaatgtatttgttgtgttgaaagttctcttaatgttttgtcttatgctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG
    |  | |    | ||    ||| |  |   ||  || |||||    ||     ||| |  ||   | |  | |||||  || ||  |    |      || ||||||||||| || |||||||| || ||||| |||||||| |||||||| |||||| |||| ||| |||| |||||   ||| || | ||| || |||
aagatatactgggcttgt--attttgggatccgatcttttaaacaatgtattgtgctgtggcctttggattcatattaatactt-gttgtgcatttatggcagGAAGAAGAAGGCAGTTCACAAGACTACCACCACTGATGACAAGAGGCTTCAAAGCACCTTGAAAAGAGTAGGAGTGAACAACATTCCTGGTATCGAAGAG

upper sequence: GLYMA11G12180.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G131577_T03 (Zea mays), 3'ss of exon 2
tttgcagtca-attcgttggctttagttttttataattaaacacaaaatgtatttgttgtgttgaaagttctctta-atgttttgtct---tatgctcggtc-tagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG
      || | ||   |  | |    ||  |   |  |  ||   |   || |  |  ||  || |   |  |||| | ||| |  ||   | || | |||   || ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||||  |||| || | |||||| |||
------gttatatatatatggtaccattgctgtcatatgtacggtaccggtctaggaagtcctggattcttacttataagttataactagctttggttggtggcagGAAGAAGAAGGCAGTCCACAAGACTACGACCACAGATGATAAAAGGCTTCAGAGCACCCTGAAAAGAATAGGAGTGAACACCATTCCTGGTATTGAAGAG

upper sequence: GLYMA11G12180.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G001887_T03 (Zea mays), 3'ss of exon 2
tttgcagtca-attcgttggctttagttttttataattaaacacaaaatgtatttgttgtgttgaaagttctcttaatgtt--ttgtcttatgctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG
   || |||| ||  | |  |  |  | |  || |  | |   |      |    ||  ||      || ||  ||||  |  || | ||    | |    || ||||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||| |||| |||||||| |||||   ||| || | |||||| |||
---gctgtcatatatggtaccaatgctgtcatacatatgataccggtccatgaaagtcctggattctgtacttataattataattatatttgattggtggcagGAAGAAGAAGGCAGTCCACAAGACTACAACCACAGATGACAAACGGCTTCAAAGCACCTTGAAAAGAATAGGAGTGAACAGCATTCCTGGTATTGAAGAG

upper sequence: GLYMA11G12180.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G041881_T01 (Zea mays), 3'ss of exon 2
-tttgcagtcaatt-cgttggcttta-gttttttataattaaacacaaaatgtatttgttgtgttgaaagttctcttaatgttttgtcttatgctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG
    | || |  || |||| |   || | | | | | ||| |        || |    | ||          |  || |||         |||||      || ||||||||||| |||||||||||  ||||||| ||||||||  |||||||||||||  |||| ||||| || |||||  | || || | ||||||||||
caccgaagccttttgcgtttgtgatatgatatgttttattgagttgcttctggacccatagtcccatgctaacaatttatgagggaaaaaatgctga---cagGAAGAAGAAGGCAGTCCACAAGACCGCAACCACCGATGACAAGCGGCTTCAGAGCACGTTGAAAAGAATTGGAGTGAACACTATTCCTGGTATTGAGGAG

upper sequence: GLYMA11G12180.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
tttgcagtcaa-ttcgttggctttagttttttataattaaacacaaaatgtatttgttgtgttgaaagttctcttaatgttttgtcttatgctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG
   |||   ||    ||||| ||| ||  | | |   || |  |||  | |         ||   | | |  || | |  |  |    |   |      || ||||||||||| || |||||||| || ||||| ||||||||  |||||||||||||| |||| || || |||| |||  |||| || | ||| ||||||
caagcacctaagcctgttgggttt-gtgatctgttcatagagtcaacttctggacccatagtcccatgctaactaatttatgagggacaaaatgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31455817|gb|CD397845.1|CD397845
EST:     ACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGTCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298196960|gb|HO041703.1|HO041703
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACGGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31467192|gb|CD409220.1|CD409220
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|213601463|gb|DB956727.1|DB956727
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|6846120|gb|AW348410.1|AW348410
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|254320515|gb|GR826964.1|GR826964
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31471769|gb|CD413797.1|CD413797
EST:     TGAAGATGNCC-GTCTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: TGAAGATGGCCGGT-TCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|4291541|gb|AI437634.1|AI437634
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|213595673|gb|DB972143.1|DB972143
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192296273|gb|FG989770.1|FG989770
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7028283|gb|AW458066.1|AW458066
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298185376|gb|HO030589.1|HO030589
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|213613487|gb|DB956945.1|DB956945
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7686591|gb|AW757239.1|AW757239
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298183043|gb|HO028306.1|HO028306
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7691849|gb|AW759969.1|AW759969
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7146664|gb|AW508586.1|AW508586
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|213606625|gb|DB959051.1|DB959051
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|5666931|gb|AI930967.1|AI930967
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|209702350|gb|BW656323.1|BW656323
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192330338|gb|FK020593.1|FK020593
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31470747|gb|CD412775.1|CD412775
EST:     ATGAAGATGCCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACCAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7232451|gb|AW567807.1|AW567807
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|15814296|gb|BI786571.1|BI786571
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298188981|gb|HO035706.1|HO035706
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|6964214|gb|AW432907.1|AW432907
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|5753622|gb|AI960909.1|AI960909
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298184421|gb|HO029634.1|HO029634
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|6482319|gb|AW201588.1|AW201588
EST:     GGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: GGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|209702351|gb|BW656324.1|BW656324
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGTGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298178137|gb|HO027520.1|HO027520
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|21595297|gb|BQ610434.1|BQ610434
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298189834|gb|HO038237.1|HO038237
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7590058|gb|AW705819.1|AW705819
EST:     GGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: GGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31311737|gb|CD396940.1|CD396940
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|19935758|gb|BQ080573.1|BQ080573
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|209713607|gb|BW679344.1|BW679344
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|27426922|gb|CA938442.1|CA938442
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192295274|gb|FG986993.1|FG986993
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|17963331|gb|BM270073.1|BM270073
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|27423982|gb|CA935502.1|CA935502
EST:     GGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: GGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|58018108|gb|CX704850.1|CX704850
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|208056150|gb|GD852429.1|GD852429
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGG-AAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|209699569|gb|BW670375.1|BW670375
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298190251|gb|HO032372.1|HO032372
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298179670|gb|HO024885.1|HO024885
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7692052|gb|AW760168.1|AW760168
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|151408364|gb|EV278172.1|EV278172
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31306334|gb|CD391537.1|CD391537
EST:     CGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: CGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|298172104|gb|HO021696.1|HO021696
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|58021658|gb|CX708399.1|CX708399
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192311011|gb|FK004406.1|FK004406
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGGCAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|13480223|gb|BG509566.1|BG509566
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGGGCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|151413132|gb|EV282940.1|EV282940
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192324686|gb|FK018752.1|FK018752
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192309439|gb|FK002845.1|FK002845
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|7684999|gb|AW755647.1|AW755647
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|22540667|gb|BU090510.1|BU090510
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31306013|gb|CD391216.1|CD391216
EST:     GGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: GGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|192333846|gb|FK025107.1|FK025107
EST:     ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: ATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
EST: gi|31465607|gb|CD407635.1|CD407635
EST:     GGTTAGAACTGGGGGAAAGGGCACCGTGAGAAG                         AAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA
genomic: GGTTAGAACTGGGGGAAAGGGCACCGTGAGAAGgtatatctat ... ctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtatttgttgtgttgaaagttctcttaatgttttgtcttatgctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG
                         tcttaat  putative branch site (score: 3)
                           ttaatgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttgcagtcaattcgttggctttagttttttataattaaacacaaaatgtatttgttgtgttgaaagttctcttaatgttttgtcttatgctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- tgcagtc
- - - - - - - - - - - - - - - - - - - -acacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg