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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttaaaccttaaaattattctattgagcaactgttctattcttcagagattaaaaaggctatctatattgttgtgattttttttcttttcttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT

Basic information

species Glycine max
transcript GLYMA11G11960.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11960.3 (Glycine max), 3'ss of exon 2
lower sequence: AT4G34640.1 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------------gtttaaaccttaaaattattctat--tgagcaactgttctattcttcagagattaaa----aaggctatctatattgtt-gtgattttttttct---------tttcttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT
                                  || | ||  | |   |  || |   |  || |   |||| || |  |  | ||  |    |  || |||| | || || ||| || |  | ||         |||  |  ||||||||||||||||||||||  ||| ||||  ||||| || || |||||||| |||||||| || || || |||  ||||||||| | |||||
gttagtgtctcttaactttgctttcaagattaccttgatacgatgaggcttctccaaaatctgctatatttctgttttgaaatgcttttatgttagagccatctttcttcttcgtgcttctgctgctaatattattttttgtacgacagAGGATGATACTAGCATACCAACTGATGAAAAGGTTCCCATCCTGATAGCTTTTCACCGGCACATATACGATACTGATTGGCATTATTCAT

upper sequence: GLYMA11G11960.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0038g00450.t01 (Vitis vinifera), 3'ss of exon 2
gtttaaaccttaaaattattctattgagcaactgttctattcttcagagattaaaaaggctatctatattg----ttgtgattttttttcttttcttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT
  |   |  | |||||| | || ||         ||  | |  |   |  |||  |||   || |||  |     |  | |||  | |    ||||||| |||||||||||||| |||||    ||||||||||| ||||| || |||||||| ||||| |||||||| ||||| ||||| ||||| ||| |||
--tgttatttcaaaatt-tcctgttatctcttactttcagttatactatgttactaagtggatatatgctcaccctcctaattcatctatggttctttt-acagAGGATGATACAAGCATTCGTACAGATGTCAAAGTGCCTATTCTGATAGCTTTTCATCGTCATATATATGACCGTGACTGGCATTTTGCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703098|gb|BW673283.1|BW673283
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|10709996|gb|BF009720.1|BF009720
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGGTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|209722769|gb|BW682867.1|BW682867
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|8826251|gb|BE209981.1|BE209981
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTTCAAG
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGT-CAAG
EST: gi|27446333|gb|CA953456.1|CA953456
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|20813646|gb|BQ298124.1|BQ298124
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|209725283|gb|BW672760.1|BW672760
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|193499460|gb|FK461255.1|FK461255
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|213595316|gb|DB968448.1|DB968448
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
EST: gi|209714966|gb|BW650812.1|BW650812
EST:     GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG                         AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT
genomic: GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGgtttgtattc ... cttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagattaaaaaggctatctatattgttgtgattttttttcttttcttttgacagAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT
                       ttgttgtgattttttt  CT-rich tract
                   tatattgttgtgattt  TA-rich tract