1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tggacacaggtttctatgttatttaatgattccatcagttttgttttgggcaagtgagatttgatcaggtttgtttacatttgatttttactttttttagGGAGAAATTACGCCGAGCAAATGTGCAATTTCTTTCTGCACCAATGAAGGATGGGACAACTGGAACAGTTATAGTCCTCACAACTCCAGATGCCCAGCGC
species | Glycine max |
transcript | GLYMA11G11620.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCGCAATGACCGGTAGTGTAGGGAGTGATCTATTGGGGGGCTTCTACAG GGAGAAATTACGCCGAGCAAATGTGCAATTTCTTTCTGCACCAATGAAGGAEST: gi|13477948|gb|BG507617.1|BG507617
genomic: GTCGCAATGACCGGTAGTGTAGGGAGTGATCTATTGGGGGGCTTCTACAGgttccttgcc ... ctttttttagGGAGAAATTACGCCGAGCAAATGTGCAATTTCTTTCTGCACCAATGAAGGA
EST: GTCGCAATGACCGGTAGTGTAGGGAGCGATCTATTGGGGGGCTTCTACAG GGAGAAATTACGCCGAGCAAATGTGCAATTTCTTTCTGCACCAATGAAGGAEST: gi|19348972|gb|BM893504.1|BM893504
genomic: GTCGCAATGACCGGTAGTGTAGGGAGTGATCTATTGGGGGGCTTCTACAGgttccttgcc ... ctttttttagGGAGAAATTACGCCGAGCAAATGTGCAATTTCTTTCTGCACCAATGAAGGA
EST: GTCGCAATGACCGGTAGTGTAGGGAGTGATCTATTGGGGGGCTTCTACAG GGAGAAATTACGCCGAGCAAATGTGCAATTTCTTTCTGCACCAATGAAGGA
genomic: GTCGCAATGACCGGTAGTGTAGGGAGTGATCTATTGGGGGGCTTCTACAGgttccttgcc ... ctttttttagGGAGAAATTACGCCGAGCAAATGTGCAATTTCTTTCTGCACCAATGAAGGA
ttgggcaagtgagatttgatcaggtttgtttacatttgatttttactttttttagGGAGAAATTACGCCGAGCAAATGTGCAATTTCTTTCTGCACCAATGAAGGATGGGACAACTGGAACAGTTATAGTCCTCACAACTCCAGATGCCCAGCGC
atttgat putative branch site (score: 5)
tttttacttttttt CT-rich tract
tttgtttacatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggacacaggtttctatgttatttaatgattccatcagttttgttttgggcaagtgagatttgatcaggtttgtttacatttgatttttactttttttagGGAGAAATTACGCCGAGCAAATGTGCAATTTCTTTCTGCACCAATGAAGGATGGGACAACTGGAACAGTTATAGTCCTCACAACTCCAGATGCCCAGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - tccatca
- - - - - - - - - - - - - - - - - - - - - - - - -gcaagtg