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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatagtttttcctggttatctttcatccttcttgtgttttgtgagtgttttgtcattgttttcaacttatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCCAGCTATGAAAATGT

Basic information

species Glycine max
transcript GLYMA11G11510.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11510.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 3'ss of exon 2
gtaagt--atagtttttcctggttatctttcatccttcttgtgttttgtgagtgttttgtcattgttttcaacttatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCCAGCTATGAAAATGT
||||     | |   | |    | ||  | ||| ||| || | || |   |  ||| |    || ||        ||  |||||| || || |||||||| ||| |||||||  | || ||||||||||| ||||| ||||| || || ||||| || || |||| |||||||||||| |||||
gtaatctggttgcgctgctatctaattctgcatgcttgttttcttctaccaa-gttattaagtttttccttcggaataccacagGTCAGGAGGATTACAACAGACTGAGACCACTGAGTTATCGTGGAGCTGATGTTTTCCTTCTGGCCTTCTCGCTAATCAGCAAGGCCAGCTATGAGAATGT

upper sequence: GLYMA11G11510.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM5G846811_T01 (Zea mays), 3'ss of exon 2
--------------------gtaagt---atagtttttcctggttatctttcatccttcttg--tgttt-tgtgagtgttttgtcattgttttcaacttatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCCAGCTATGAAAATGT
                    || | |   ||  |||| ||   ||       |||||| ||   ||||| |   | || ||   | |  | ||   |   || | |||| ||||| |||||||| ||| |||||||  | |||||||||||||| ||||| || || || |||||||| || || || | |||||||||||| |||||
gtgaccagctatcctattttgttactttgatgcttttcccccctttgtgcatatcctttttccttgtttatcaaaatggttgaacttcatctttg-caactgccgcagGTCAAGAGGATTACAACAGACTGAGACCACTGAGCTATCGTGGAGCTGATGTTTTTCTTCTGGCTTTCTCACTGATCAGTAAGGCCAGCTATGAGAATGT

upper sequence: GLYMA11G11510.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM5G803949_T02 (Zea mays), 3'ss of exon 2
----------------------------------gtaagtatagtttttcctggttatctttcatcc----ttcttgtgttttgt------gagtgttttgtcattgttttcaacttatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCCAGCTATGAAAATGT
                                   | |  ||  |||||  |   | || ||    |    | ||| |  |||||       | || ||   | |   | |   |   ||  | ||| ||||| |||||||| ||| |||||||  | |||||||||||||| ||||| || || || |||||||| || || || |  ||||||||||| |||||
gtgactagccgtgctgttctgtcctgtcctgctacttatgatgctttttttttcctttcctttgcgcgatatcctttttctttgttcatcaaaatggttgagcttccatctttgcaactgtaatagGTCAAGAGGATTACAACAGACTGAGACCACTGAGCTATCGTGGAGCTGATGTTTTTCTTCTGGCTTTCTCACTGATCAGTAAAGCCAGCTATGAGAATGT

upper sequence: GLYMA11G11510.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0038g02380.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------------------------------------------------------------------------------gtaagtatagtttttcc-tggttatctt-tcat----ccttcttgtgttttgtgagtgttttgtcattgttttcaacttatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCCAGCTATGAAAATGT
                                                                                                           |||  ||  | | ||  ||||| ||||  ||     |||  ||| |  || | | | ||       | || | || |||||| |||||||| || ||||||||||| |||||||| || ||||| ||||| |||||||| || |||||||||||||| ||||| |||| ||| ||||||||||||||
gtaaagttccagacctgtaggaattgtttgttcacatttttttgaggtactttgcttgctctcagggtaaaaaatacattgttcttaaaggcaaacaaaaactactttaaagatgctgtctcaatggttgtcttaccactacacctctttgagggttcttaatattgaactgattttgttaatttatggaacagGCCAGGAGGATTACAATAGGTTGAGACCTTTGAGCTACCGTGGTGCAGATGTCTTTCTGCTTGCTTTCTCCCTCATTAGCAAGGCTAGCTATGAAAATGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7589435|gb|AW705209.1|AW705209
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|298169211|gb|HO020571.1|HO020571
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGGGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|298197330|gb|HO044809.1|HO044809
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|298171990|gb|HO021582.1|HO021582
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|16996922|gb|BM086294.1|BM086294
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|5760314|gb|AI965741.1|AI965741
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|151394170|gb|EV264041.1|EV264041
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|19346953|gb|BM891833.1|BM891833
EST:     TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|298177328|gb|HO027109.1|HO027109
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|26058249|gb|CA801163.1|CA801163
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|5342846|gb|AI795130.1|AI795130
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|23725796|gb|BU760863.1|BU760863
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|298182534|gb|HO031269.1|HO031269
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|4293505|gb|AI442057.1|AI442057
EST:     TGTCGGTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|192329017|gb|FK021091.1|FK021091
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|192297529|gb|FG989535.1|FG989535
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|7589250|gb|AW705028.1|AW705028
EST:     TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTCGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|192329018|gb|FK021092.1|FK021092
EST:     TGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGGGTTGTGGGATACTGCTGgtaagtatag ... tatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatccttcttgtgttttgtgagtgttttgtcattgttttcaacttatggcacagGCCAAGAAGATTACAATAGATTGAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCCAGCTATGAAAATGT
                                attgtttt  TA-rich tract