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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtcaagcagtatttttagaaattttactcattgcaatcgtttaaatcaatttgactcgtgaaatactttttgaccaagaggatgtagaaaaattgaagtaacaatttatgctcaatcaacttttaaaaaatgctatttttcctgtcctatctgatattgacaacctgcagtatgcaataacttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG

Basic information

species Glycine max
transcript GLYMA11G11370.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409712|gb|EV279520.1|EV279520
EST:     AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagc ... acttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
EST: gi|192301026|gb|FG987981.1|FG987981
EST:     AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagc ... acttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
EST: gi|163921467|gb|EH038979.1|EH038979
EST:     AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagc ... acttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
EST: gi|120533708|gb|EH261841.1|EH261841
EST:     AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagc ... acttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
EST: gi|213597314|gb|DB964387.1|DB964387
EST:     AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAANACTGTGG
genomic: AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagc ... acttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
EST: gi|151406317|gb|EV276132.1|EV276132
EST:     AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagc ... acttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
EST: gi|298170662|gb|HO019286.1|HO019286
EST:     AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagc ... acttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
EST: gi|192306070|gb|FG993660.1|FG993660
EST:     AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagc ... acttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
EST: gi|19053954|gb|BM732621.1|BM732621
EST:     AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAG                         GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
genomic: AATTACACACAGAGTATTTTTGGATATTGATATTGATAAACAGCGTTTAGgttgtcaagc ... acttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttcctgtcctatctgatattgacaacctgcagtatgcaataacttctacagGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG
                                        caataac  putative branch site (score: 2)
                                              cttctac  CT-rich tract
                                         aataactt  TA-rich tract