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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaactcaccaacattaagataatttaattagctaacatacgttcaaagtaattaaattttaactttggttgtcgttttattcaaataaataaataaattatgcagTGGTTTGAAGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGTTTGGCCTTTAACTGCACATTTCTTCTGTTTGGATCTGTTATACAATTGA

Basic information

species Glycine max
transcript GLYMA11G11310.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11310.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 2
--------------------------gttcaactcaccaacattaagataatttaattagct---aacatacgttcaaagtaattaaattttaactttggttgtcgttttattcaaataaataaataaattat----------gcagTGGTTTGAAGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGTTTGGCCTTTAACTGCACATTTCTTCTGTTTGGATCTGTTATACAATTGA
                             | | |  | | |  ||     ||||  || | |   ||  |  |||  || |||    ||   || |||| | |   || ||  | ||||| |   |   || |          |||||||||||| ||||| ||||| || || |||||||||||||| ||||| ||  |   ||| |||||||| || || || || || || || || ||  | |
gtgcgtgtgtcatgtgtatatatatatgactatttgctagctatacttgtattttgtttgttccaaattttggtttgaattaacaccatcagaagtttg-tggaaattctacaccaataattgtcttttttttctggggagccgcagTGGTTTGAGGTTCTGGATGGGCTACTGGGGAAGCACTGGAGGAACGTCGGCCTCTTCTTCAACTGCACTTTCCTCCTCTTCGGCTCCGTCATCCAGCTCA

upper sequence: GLYMA11G11310.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 3'ss of exon 2
gttcaactcaccaacattaagataatttaattagctaacatacgttcaaagtaattaaattttaactttggttgtcgttttattcaaataaataaataaattatgcagTGGTTTGAAGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGTTTGGCCTTTAACTGCACATTTCTTCTGTTTGGATCTGTTATACAATTGA
|||    |    | | ||   || ||| ||      |  |||  |   |  |  ||    |  ||      ||| | | || ||    |||          | || |||||||||| |||||||||||| | || |||||||| ||||| || || ||||| |||||||||||||| || ||||| ||||||||||| || ||| | |
gtttctttactgatcttttctattattcaa------agtatatatctgacatgttttttgtacaaaaacatttgacatgttgtt-ggttaa----------tgtgaagTGGTTTGAGGTTCTTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCA

upper sequence: GLYMA11G11310.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 2
gttcaactcaccaacatta---agataatttaattagctaacatacgttcaaagtaattaaattttaactttggttgtcgttttattcaaataaataaataaattatgcagTGGTTTGAAGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGTTTGGCCTTTAACTGCACATTTCTTCTGTTTGGATCTGTTATACAATTGA
||     |||  |  | |    |  |  | |      | |   | |  ||    | ||  | ||   || | ||  ||  |   | |   ||   |       | |   |||||||||||||||||||||| || || || || |||||||| |||||||| ||||| || |||||||| ||||||||||||||||| || || ||| | |
gtcttgatcagtactactccccatttcttctctcctaccactgttccatctttttgatccatttcccacatggg--gttctcacactttcatgtgttttcttgtca-aaagTGGTTTGAAGTTCTTGATGGGCTGCTTGGCAAACACTGGAGGAACGTGGGGTTGGCTTTCAACTGCACTTTTCTTCTGTTTGGATCCGTGATTCAACTCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023230|gb|BM094264.1|BM094264
EST:     GAACAAGAAAAGAGAGAGAAAAAGTTAACTTCAGAAACCATGTCATCCAG                         TGGTTTGAAGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGT
genomic: GAACAAGAAAAGAGAGAGAAAAAGTTAACTTCAGAAACCATGTCATCCAGgttcaactca ... aattatgcagTGGTTTGAAGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGT
EST: gi|209726328|gb|BW659628.1|BW659628
EST:     GAACAAGAAAAGAGAGAGAAAAAGTTAACTTCAGAAACCATGTCATCCAG                         TGGTTTGAAGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGT
genomic: GAACAAGAAAAGAGAGAGAAAAAGTTAACTTCAGAAACCATGTCATCCAGgttcaactca ... aattatgcagTGGTTTGAAGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGT
EST: gi|298180126|gb|HO025341.1|HO025341
EST:     GAACAAGAAAAGAGAGAGAGAAGGTTAACTTCAGAAACCATGTCATCCAG                         TGGTTTGAGGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGT
genomic: GAACAAGAAAAGAGAGAGAAAAAGTTAACTTCAGAAACCATGTCATCCAGgttcaactca ... aattatgcagTGGTTTGAAGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaaattttaactttggttgtcgttttattcaaataaataaataaattatgcagTGGTTTGAAGTTCTTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGTTTGGCCTTTAACTGCACATTTCTTCTGTTTGGATCTGTTATACAATTGA
      ttttaac  putative branch site (score: 2)
                  ttgtcgttttattcaa  TA-rich tract