1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtaccagtatcacacttaagtttagctgaggaagaattagaagtagaaataacctatatattgtttgattaaggcttatagatttgtagtgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAA
species | Glycine max |
transcript | GLYMA11G09790.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAG GTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGEST: gi|9820855|gb|BE556365.1|BE556365
genomic: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGgtgcgtttta ... tgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGG
EST: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAG GTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGEST: gi|151397286|gb|EV267159.1|EV267159
genomic: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGgtgcgtttta ... tgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGG
EST: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAG GTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGEST: gi|192303486|gb|FG995920.1|FG995920
genomic: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGgtgcgtttta ... tgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGG
EST: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAG GTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGEST: gi|58016117|gb|CX702859.1|CX702859
genomic: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGgtgcgtttta ... tgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGG
EST: CTGTACAAGCTCCACA-TGGAGAAAGTTTTATCTACTGTTCCTACAATAG GTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGEST: gi|151405888|gb|EV275703.1|EV275703
genomic: CTGTACAAGCTCCACATTGGAG-AAGTTTTATCTACTGTTCCTACAATAGgtgcgtttta ... tgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGG
EST: ACTGTACAAGCTCCACATTGGAGAAGTCTTATCTACGGTTCCTACAATAG GTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGEST: gi|192334432|gb|FK024447.1|FK024447
genomic: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGgtgcgtttta ... tgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGG
EST: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAG GTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGG
genomic: ACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGgtgcgtttta ... tgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGG
agaaataacctatatattgtttgattaaggcttatagatttgtagtgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAA
tatatattgtttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaccagtatcacacttaagtttagctgaggaagaattagaagtagaaataacctatatattgtttgattaaggcttatagatttgtagtgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - -atcacac
- - - - - - - - - - - - -gctgagg
- - - - - - - - - - - - - - - - - - - - - - - gaaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg