1 5' 3' | 2 5' 3' | 3 5' 3' |
...cctatagattcgtagatctttatatttgaaaaaatgtcttgcaatcaggggcgagaaactatactatactgaaatgattggtatttatgtccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGA
species | Glycine max |
transcript | GLYMA11G09150.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|31561892|gb|CD487730.1|CD487730
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|254346216|gb|GR859829.1|GR859829
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|298176503|gb|HO026738.1|HO026738
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCCCCGTGGCTTTGACCEST: gi|151398942|gb|EV268813.1|EV268813
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|192327127|gb|FK015519.1|FK015519
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|31467429|gb|CD409457.1|CD409457
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|31306974|gb|CD392177.1|CD392177
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|151412914|gb|EV282726.1|EV282726
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|19452429|gb|BM953839.1|BM953839
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|33388212|gb|CA851419.1|CA851419
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|6667111|gb|AW278570.1|AW278570
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|193327961|gb|FK295550.1|FK295550
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCEST: gi|151410461|gb|EV280276.1|EV280276
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
EST: AAGTACATGGACAAGAAGCTTCAGA TTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtctgc ... ccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACC
caggggcgagaaactatactatactgaaatgattggtatttatgtccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGA
tgtcccctt CT-rich tract
tatactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctatagattcgtagatctttatatttgaaaaaatgtcttgcaatcaggggcgagaaactatactatactgaaatgattggtatttatgtccccttgcagTTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - -tgcaatc
- - - - - - - - - - - - - - - - - - - - - - - - gggcgag