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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttcctttctcagatccaccgttatcttgtttttcgttggatcctgtaactgtttctgcaattacgattgttaatttgcgtctttctctcgctgaattcgttgtttcagACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGACGTTCTTTGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCA

Basic information

species Glycine max
transcript GLYMA11G08390.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08390.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 2
-----------------gtcagttcctttctcagatccaccgttatcttgttt---ttcgttggatcctgtaactgtttctgcaattacgattgttaatttg-----------cgtctttctctcgctgaattcgttgtttcagACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGACGTTCTTTGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCA
                  || | ||||   |    || | ||  || |  |||   ||  ||  ||  | ||  | ||| | |  ||| ||||   ||| ||           |    || ||    |   |  | | ||  ||||||||| || |||||| | || ||||||||||||| ||||||  |||||||| |  | ||||||||||| ||||| ||||| |||||||| || || ||
gtaatttctcctcaccgatccgatcctcctttgtgtcgatcgagatgtaatttaatttgatttaattatttatttatttttact-ttaagatttgaaatctgaagaataagggcaagattttccttttctgtatggttttgaagACATGCGAGCATTTGATGAATTGAGGAAGCTGGAGATGTTCTTCAAGGAAGAGGCAAGGCGCGGTTGCTCTATTATCGATCTCTATGAACTTGTGCAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193594995|gb|FK546812.1|FK546812
EST:     CTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTAT                         ACATGCGCGCCTTTGAT
genomic: CTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTATgtcagttcct ... gttgtttcagACATGCGCGCCTTTGAT
EST: gi|254342605|gb|GR858767.1|GR858767
EST:     CTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTAT                         ACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGACGTTCTTTGAGGAAG
genomic: CTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTATgtcagttcct ... gttgtttcagACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGACGTTCTTTGAGGAAG
EST: gi|15285344|gb|BI469235.1|BI469235
EST:     CTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTTCTACGAACTAT                         ACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGATGTTCTTTGAGGAAG
genomic: CTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTATgtcagttcct ... gttgtttcagACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGACGTTCTTTGAGGAAG
EST: gi|120531471|gb|EH259604.1|EH259604
EST:     CTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTAT                         ACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGACGTTCTTTGAGGAAG
genomic: CTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTATgtcagttcct ... gttgtttcagACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGACGTTCTTTGAGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgcaattacgattgttaatttgcgtctttctctcgctgaattcgttgtttcagACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGACGTTCTTTGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCA
              tgttaat  putative branch site (score: 3)
                                              ttgtttc  putative PPT
            attgttaattt  TA-rich tract