Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcttccctttctatgcttttcctccttcatcagcatcatcaaaatccacggaacttctgtgttaacgtcttcttttgatctctccccctggtgtctaattgatcagCAAGCATTTTTGCATATGGACAAACAAGTAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGGCAGACATTTTTAACTACATTGAAAA

Basic information

species Glycine max
transcript GLYMA11G07950.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07950.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G51150.2 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtttcttccctttctatgcttttcctccttcatcagcatcatcaaaatccacggaacttctgtgtt--aacgtcttcttttgatctctccccctggtgtctaat-tgatcagCAAGCATTTTTGCATATGGACAAACAAGTAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGGCAGACATTTTTAACTACATTGAAAA
                                    | ||     ||     | || |   ||  || ||  | | |||     | || | |    |   | || | | |  ||||| ||  | ||||||||||| |||||||| ||||| ||||||||||| |||| ||| || || || ||  |  |||| || || | | | |||||||| ||
-----------------------------------gtaaggcatgtct---cctactgctttttagttttttatcctctgtggctcatgtttgatacaaatttcaactgttttcagCTAGTGTCTTTGCATATGGGCAAACAAGCAGTGGAAAGACATACACTATGATTGGTATTACGGATTATGCCTTGGCTGATATATATGATTACATTGAGAA

upper sequence: GLYMA11G07950.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtttcttccctttctatgcttttcctccttcatcagcatcatcaaaatccacggaacttctgtgttaacgtcttcttttgatctctccccctggtgtctaattgatcagCAAGCATTTTTGCATATGGACAAACAAGTAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGGCAGACATTTTTAACTACATTGAAAA
|||||| |   |  ||| | |  |||   |||||   | || || | ||  ||    | || ||  || |||   ||       || | | ||                  |||||| |||||||| |||||||||||||| ||||| ||||||| ||| ||||| || || ||||| || ||  ||||||| || | | || | || || | 
gtgagtataaacatttttttt--tttgtgtccttttcctgcttcttgaacttcacttggacctcattgataaatactcaacaaaatattttcc------------------agCAAGTATTTTTGCTTATGGACAAACAAGCAGTGGAAAGACATTCACTATGAGCGGAATTACTGAGTATACCATGGCAGATATATATGACCATATAGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttctgtgttaacgtcttcttttgatctctccccctggtgtctaattgatcagCAAGCATTTTTGCATATGGACAAACAAGTAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGGCAGACATTTTTAACTACATTGAAAA
                                            taattgat  TA-rich tract