Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcgcatatgatttatggcttaacttactgtcatttatgttttctattattgtttgaacttgcactagcaattgactgtctgcttcgggcaggttactactatctgttgctttgcctttgtgaggctcctgttgttttattttttgaaagatgcatttgtttttatcttgagttcttctacttaatgcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07910.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os06g49990.3 (Oryza sativa), 3'ss of exon 2
gtttgtcgcatatgatttatggcttaacttactgtcatttatgttttctattattgtttgaacttgcactagcaattgactgtctgcttcgggcaggttactactatctgttgctttgcctttgtgaggctcctgttgttttattttttgaaagatgcatttgtttttatcttgagttcttctacttaatgcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG
                                                                                               | |    |     ||| ||| ||  ||||  |    ||   ||         |  |||| |  | |  || ||  ||   |||  | |   |          ||||| || || ||||||||| |||| || ||||||||||| ||||| ||||| || ||||| ||||| ||||| |||
-----------------------------------------------------------------------------------------------gttcgtgatagcgtgtggctctg--tttgcta----ccaaatgcgccgccagt--aaagctcaactgattgtttgctgtcgtttctgtggctt---------cagGAGCCTCTAAAGTTGGATTTTGTCATAAGCTTTCCTGACCATGGGTTCCACCTGCGCTTCGATCCTTGGTCACAG

upper sequence: GLYMA11G07910.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgtcgcatatgatttatggcttaacttactgtcatttatgttttctattattgtttgaacttgcactagcaattgactgtctgcttcgggcaggttactactatctgttgctttgcctttgtgaggctcctgttgttttattt-tttgaaagatgcatttgtttttatcttgagttcttctacttaatgcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG
                                                                                                |||  |||||  |   |  |||  ||   ||  || || || |   | || | |  |   |   ||   ||||  ||    |||   | | |      ||||||||| ||  ||||  |||||||||||||||||||||| |||||||| || |||||||| |||||||| |||||||||
------------------------------------------------------------------------------------------------gtttgtactaggtcacggattgtatta--gatacttcttttatccaacttatcttcattgtttgttgagtttt--ctatgattccgttgcct------catgcagGATCCTTTGAAACTGGATGTTGTTATTAGCTTTCCAGATCATGGGTTTCATCTTCGATTTGATCCCTGGTCTCAG

upper sequence: GLYMA11G07910.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 3'ss of exon 2
gtttgtcgcatatgatttatggcttaacttactgtcatttatgttttctattattgtttgaacttgcactagcaattgactgtctgcttcgggcaggttactactatctgttgctttgcctttgtgaggctcctgttgttttattttttgaaagatgcatttg--tttttatcttgagttcttctactta-atg----cacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG
                                                                                                            |||    ||    ||  |   ||    ||       ||  | |  |    ||  |  | ||  |  |||    |   ||| | |||       || ||||| ||  | ||| ||||| | || ||||||||||| |||||||| || |||||||| |||||||| ||||| |||
-----------------------------------------------------------------------------------------------------------gtgtcatcttattgttaagtatcttgcatttccagcattgctaaggggcatatcaggatcttgctactgaaacatctcactgatatgacaatttatacagGAGCCATTAAAGCTGGATATAGTCATTAGCTTTCCAGATCATGGTTTTCATCTTCGTTTTGATCCTTGGTCGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193410135|gb|FK372958.1|FK372958
EST:     AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
EST: gi|193415174|gb|FK380092.1|FK380092
EST:     AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
EST: gi|27426508|gb|CA938028.1|CA938028
EST:     AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
EST: gi|23052777|gb|BU577268.1|BU577268
EST:     TTTAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
EST: gi|213595247|gb|DB963980.1|DB963980
EST:     AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
EST: gi|7233548|gb|AW568953.1|AW568953
EST:     AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG                         GAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT
genomic: AGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGgtttgtcgca ... gcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaaagatgcatttgtttttatcttgagttcttctacttaatgcacatgcagGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAG
                                      acttaat  putative branch site (score: 4)
             atttgtttttatctt  TA-rich tract