1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaccagattcttctcaatccacaccctaaatattatcgatttcgttcttccattattcctttacattcctttgctttgtttctctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGACCTACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCT
species | Glycine max |
transcript | GLYMA11G07810.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGACEST: gi|151393796|gb|EV263671.1|EV263671
genomic: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
EST: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGACEST: gi|254317299|gb|GR826244.1|GR826244
genomic: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
EST: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGACEST: gi|10238896|gb|BE807792.1|BE807792
genomic: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
EST: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGACEST: gi|254317300|gb|GR826245.1|GR826245
genomic: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
EST: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG GTGGGTGGTTGAAGTCACTGGAGCT-CTGGGACACTTTACGCTAATGAGAC
genomic: GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
gatttcgttcttccattattcctttacattcctttgctttgtttctctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGACCTACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCT
ttattcctttacattc CT-rich tract
tttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccagattcttctcaatccacaccctaaatattatcgatttcgttcttccattattcctttacattcctttgctttgtttctctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGACCTACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG