1 5' 3' | 2 5' 3' | 3 5' 3' |
...aactttgttctcaaatggattacttggtattcacacactcgcacattgggaagcagaatatatgataagaagttgtattgttttgatgttaattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCG
species | Glycine max |
transcript | GLYMA11G07410.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT CGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGGEST: gi|193727018|gb|FK662822.1|FK662822
genomic: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATgtaagtttgc ... aattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
EST: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT CGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGGEST: gi|208026174|gb|GD822500.1|GD822500
genomic: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATgtaagtttgc ... aattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
EST: TATCTGTTGTACATTGGCCTGGTACCAT CGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAEST: gi|208281105|gb|GE079707.1|GE079707
genomic: TATCTGTTGTACATTGGCCTGGTACCATgtaagtttgc ... aattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAA
EST: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT CGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGGEST: gi|8282411|gb|BE019972.1|BE019972
genomic: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATgtaagtttgc ... aattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
EST: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT CGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
genomic: GAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATgtaagtttgc ... aattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGG
ttgggaagcagaatatatgataagaagttgtattgttttgatgttaattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCG
tgttaat putative branch site (score: 3)
tattgttttgatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactttgttctcaaatggattacttggtattcacacactcgcacattgggaagcagaatatatgataagaagttgtattgttttgatgttaattatgcagCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG