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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcgtaaatgattccgttaggttttcgcaattttcgttgattctactttgtgttttaattaattgatatgcttttctttctcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACGCTCCACCTGTCCCAGAAACTGAGACTCCT

Basic information

species Glycine max
transcript GLYMA11G07200.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07200.2 (Glycine max), 3'ss of exon 2
lower sequence: AT3G50670.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttcgtaaatgattccgttaggttttcgcaattttcgttgattctactttgtgttttaattaattgatatgcttttctttctcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACGCTCCACCTGTCCCAGAAACTGAGACTCCT
                      || |   |   | |   ||||| |  ||| | |  |    | ||||| |  | || | | |    |  ||| ||||| || ||||| || || ||||| |||||||| || ||||||||||||||||||   ||||||  |||    |||
----------------------gtatcaacttgtatatctgattatgttttctttgctttggatttgattttgtcttgtgtattgaatatagGTATGGCTCAGTTTGTAAGTAACTTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTAAGCCAGAAGTTGAATTACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727268|gb|BW655253.1|BW655253
EST:     GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAG                         GGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
genomic: GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGgtttcgtaaa ... tcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
EST: gi|209728976|gb|BW655019.1|BW655019
EST:     GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAG                         GGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
genomic: GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGgtttcgtaaa ... tcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
EST: gi|209698445|gb|BW667242.1|BW667242
EST:     GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAG                         GGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
genomic: GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGgtttcgtaaa ... tcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
EST: gi|11412754|gb|BF424765.1|BF424765
EST:     GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAG                         GGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
genomic: GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGgtttcgtaaa ... tcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
EST: gi|213603451|gb|DB970492.1|DB970492
EST:     GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAG                         GGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
genomic: GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGgtttcgtaaa ... tcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
EST: gi|18039679|gb|BM307973.1|BM307973
EST:     GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAG                         GGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
genomic: GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGgtttcgtaaa ... tcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
EST: gi|213618444|gb|DB963373.1|DB963373
EST:     GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAG                         GGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
genomic: GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGgtttcgtaaa ... tcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
EST: gi|8826552|gb|BE210282.1|BE210282
EST:     GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAG                         GGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
genomic: GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGgtttcgtaaa ... tcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
EST: gi|26058824|gb|CA801738.1|CA801738
EST:     GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAG                         GGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG
genomic: GTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGgtttcgtaaa ... tcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgattctactttgtgttttaattaattgatatgcttttctttctcttttgaagGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACGCTCCACCTGTCCCAGAAACTGAGACTCCT
                               tatgcttttctttctc  CT-rich tract
                 ttttaattaattgata  TA-rich tract