1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatgagaagtttctgtcaatctttatcagttgactttaataaggtgctcattgattgtcttgtttgttgccagGAACGAGTGCGTTCATAATCCTGTACTGTTCTTTGCCATATTGTCCAATCAGAGATCCGGTAGTGGGTGGTTTGAGACCCTTTTGAATAGCCACATTAAT
species | Glycine max |
transcript | GLYMA11G06080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTAATGAATACTCACCTACTACATTATCCTAAACCCGCATCCTTTAGCAG GAACGAGTGCGCTCATAATCCTGTACTGTTCTTTGCCATATTGTCCAATCAEST: gi|24135539|gb|BU926049.1|BU926049
genomic: CTAATGAATACTCACCTACTACATTATCCTAAACCCGCATCCTTTAGCAGgtaatgagaa ... ttgttgccagGAACGAGTGCGTTCATAATCCTGTACTGTTCTTTGCCATATTGTCCAATCA
EST: CTAATGAATACTCACCTACTACATTATCCTAAACCCGCATCCTTTAGCAG GAACGAGTGCGTTCATAATCCTGTACTGTTCTTTGCCATATTGTCCAATCAEST: gi|24135607|gb|BU926117.1|BU926117
genomic: CTAATGAATACTCACCTACTACATTATCCTAAACCCGCATCCTTTAGCAGgtaatgagaa ... ttgttgccagGAACGAGTGCGTTCATAATCCTGTACTGTTCTTTGCCATATTGTCCAATCA
EST: CTAATGAATACTCACCTACTACATTATCCTAAACCCGCATCCTTTAGCAG GAACGAGTGCGTTCATAATCCTGTACTGTTCTTTGCCATATTGTCCAATCA
genomic: CTAATGAATACTCACCTACTACATTATCCTAAACCCGCATCCTTTAGCAGgtaatgagaa ... ttgttgccagGAACGAGTGCGTTCATAATCCTGTACTGTTCTTTGCCATATTGTCCAATCA
atctttatcagttgactttaataaggtgctcattgattgtcttgtttgttgccagGAACGAGTGCGTTCATAATCCTGTACTGTTCTTTGCCATATTGTCCAATCAGAGATCCGGTAGTGGGTGGTTTGAGACCCTTTTGAATAGCCACATTAAT
cattgat putative branch site (score: 4)
tcttgttt putative PPT
actttaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgagaagtttctgtcaatctttatcagttgactttaataaggtgctcattgattgtcttgtttgttgccagGAACGAGTGCGTTCATAATCCTGTACTGTTCTTTGCCATATTGTCCAATCAGAGATCCGGTAGTGGGTGGTTTGAGACCCTTTTGAATAGCCACATTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC