1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgttaattttttaaactttattttgtttagcatactatgccatttcaaattcttctgatatttttccttactttatgcactcttcaatattattttacagATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACATTCGAAAACTCCCAGTT
species | Glycine max |
transcript | GLYMA11G05340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAGAAG ATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATTEST: gi|192297038|gb|FG990324.1|FG990324
genomic: GCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAGAAGgtactccttt ... tattttacagATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATT
EST: GCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAGAAG ATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAGATATTEST: gi|192334448|gb|FK025569.1|FK025569
genomic: GCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAGAAGgtactccttt ... tattttacagATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATT
EST: GCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAGAAG ATTAAAAGCGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATTEST: gi|213592872|gb|DB969838.1|DB969838
genomic: GCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAGAAGgtactccttt ... tattttacagATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATT
EST: GCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAGAAG ATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATTEST: gi|208077290|gb|GD876949.1|GD876949
genomic: GCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAGAAGgtactccttt ... tattttacagATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATT
EST: AGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAGAAG A-TAAAAGAGAGAATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATAT
genomic: AGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAGAAGgtactccttt ... tattttacagATTAAAAGAGAG-ATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATAT
caaattcttctgatatttttccttactttatgcactcttcaatattattttacagATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACATTCGAAAACTCCCAGTT
tccttac putative branch site (score: 2)
ttatttt putative PPT
tcttcaatattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttaattttttaaactttattttgtttagcatactatgccatttcaaattcttctgatatttttccttactttatgcactcttcaatattattttacagATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACATTCGAAAACTCCCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - ctatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactc