1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtacaataatcggctttcacttagcaacttaattgtttacttttgggattggctcgctgacaaatattttcttttatgttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
species | Glycine max |
transcript | GLYMA11G05080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|151410326|gb|EV280141.1|EV280141
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|16349420|gb|BI975015.1|BI975015
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|209716493|gb|BW676943.1|BW676943
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|151405432|gb|EV275246.1|EV275246
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|193625198|gb|FK577382.1|FK577382
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACTGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|58023255|gb|CX709996.1|CX709996
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|254344316|gb|GR851119.1|GR851119
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|58016934|gb|CX703676.1|CX703676
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|120492024|gb|EH220191.1|EH220191
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|151412616|gb|EV282428.1|EV282428
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|254344317|gb|GR851120.1|GR851120
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|207732378|gb|GD708551.1|GD708551
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACTGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|192323170|gb|FK017396.1|FK017396
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|298177742|gb|HO023761.1|HO023761
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|254335359|gb|GR846856.1|GR846856
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|58022559|gb|CX709300.1|CX709300
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|57574961|gb|CX547936.1|CX547936
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|18733799|gb|BM527816.1|BM527816
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|192307680|gb|FK001624.1|FK001624
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: GACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|193692589|gb|FK629360.1|FK629360
genomic: GACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|151395085|gb|EV264956.1|EV264956
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|151401783|gb|EV271596.1|EV271596
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|254335360|gb|GR846857.1|GR846857
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: GACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATCCCAACTEST: gi|298167845|gb|HO013108.1|HO013108
genomic: GACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|120491652|gb|EH219819.1|EH219819
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|58023508|gb|CX710249.1|CX710249
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|10235042|gb|BE803930.1|BE803930
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: GGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|9203981|gb|BE330205.1|BE330205
genomic: GGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|192301117|gb|FG988012.1|FG988012
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|58022262|gb|CX709003.1|CX709003
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|120491738|gb|EH219905.1|EH219905
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: GTAAATGTAGTTGCT ACCGGTGGATATAGTGAGGACATGATTCCAACTEST: gi|151409006|gb|EV278814.1|EV278814
genomic: GTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
EST: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCT ACCGGTGGATATAATGAGGACATGATTCCAACT
genomic: TAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTgtaagtacaa ... ttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
tgtttacttttgggattggctcgctgacaaatattttcttttatgttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
cgctgac putative branch site (score: 3)
ttttcttttatgtt putative PPT
acaaatattttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacaataatcggctttcacttagcaacttaattgtttacttttgggattggctcgctgacaaatattttcttttatgttgtttatagACCGGTGGATATAGTGAGGACATGATTCCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA