Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgggttttagttcaattaatgacacaccttcttttgactggtggagttttttttttttctcccggtgttcctaatgttcatcttttcatgttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA

Basic information

species Glycine max
transcript GLYMA11G04330.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 3'ss of exon 2
tgggttttagttcaattaatgacacaccttcttttgactggtggagttttttttttttctcccggtgtt-cctaatgttcatcttttcatgttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA
   || | |   ||  |  ||   ||  | |  ||   || |  |  |  ||     ||  | ||  ||  || |||    |  | |  | |||||  ||||||||||||||| |||||| |||| || ||| | ||||||||||| || || ||||| || || ||||| || |||| |||||||||||
---gtatgatggcatcttttgctgcatttccagttagttgttcta-ctccttgggaatcggcaggcattatcttatgcattttgtatttttttttctgcagGGATACAGCTGGTCAGGAACGATTCAGGAGTTTGATTCCAAGCTATATCAGAGACTCTTCCGTTGCTGTCATCGTATTTGATGTTGCAA

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 2
tgggttttagttcaattaatgacacaccttcttttgactggtggagttttttttttttctcccggtgttcctaatgttcatcttttcatgttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA
         ||    | | |   ||  | |   | | ||| | |    ||    | |     | ||   ||| |||  ||| |||| || || |   ||||||||| ||||| ||||||||||| || ||| | ||||||||||| ||||| ||||| || || ||||| |||||||  ||||||||||
---------gtatggtgactactactgcattcatagcctgtttgccccttgagatctatggactgttgaccttatg--catgtttt-attttctttgcagGGATACTGCTGGTCAGGAAAGATTCAGGAGTTTAATTCCAAGCTATATTAGAGACTCTTCAGTTGCTGTCATTGTATTCGATGTTGCAA

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G075719_T01 (Zea mays), 3'ss of exon 2
tgggttttagttcaattaatgacacaccttcttttgactggtggagttttttttttttctcccggt-gttcctaatgttcatcttttcatgttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA
         ||  ||||| |   ||  | ||  ||  |  ||   |     || |  ||| | |   |||     | | ||| | ||  | | || | ||||||||||||||| |||||||| || || ||| | ||||||||||| || || ||||| || || ||||| |||||||  ||||||||||
---------gtataattactactactgcatccgttagcctgtatggccccattgtgatctacggaccgttgaccttatgcatgtgttgttttctttg-cagGGATACAGCTGGTCAGGAAAGGTTCAGGAGTTTAATTCCAAGCTATATCAGAGACTCTTCAGTTGCTGTCATTGTATTCGATGTTGCAA

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G44610.1 (Arabidopsis thaliana), 3'ss of exon 2
--tgggttttagttcaattaatgacacaccttcttttgactggtggagttttttttttttctcccggtgttcctaatgttcatcttttcatgttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA
    | | ||    |  ||  | |     |   |  |||    |    ||     |  || |   | || |  |||  |  |       |    |  ||||||||||||||||| || ||  |||| || ||||| ||||| ||||| || ||||| || || || ||||||||||| |||||||||||||
gtaagatcttgagcctctt--tcaattttcgaatactgaagaataacattgcagatcatttttt-gatgat--taacatcgagagccgaaatcatatgacagGGATACAGCTGGGCAAGAGCGATTCAGGAGTCTAATTCCGAGCTATATCAGGGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAA

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv15s0021g00640.t01 (Vitis vinifera), 3'ss of exon 2
tgggttttagttcaat-taatgacacaccttcttttgactggtggagttttttttttttctcccggtgttcctaatgttcatcttttcatgttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA
    |||| || |||| | |||          |     |        |  | |     |  |    |||   |    ||  | ||||| | |||    ||||||||| || || |||||||| || || ||||| || ||||| |||||||||||||| ||||| || || |||||||||||||||||||
aatatttttgtacaatctcatgttttgaaacatcaaatccaagtctataatctgacgatggctaattgtctgtttcttttcttttttc-tttttctttcagGGATACTGCAGGACAGGAAAGGTTCAGGAGTCTGATCCCAAGTTACATTAGGGACTCCTCTGTTGCAGTCATTGTATATGATGTTGCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321711|gb|FK013159.1|FK013159
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|7925544|gb|AW831570.1|AW831570
EST:     AACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: AACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|298167985|gb|HO013248.1|HO013248
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTATAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|254335666|gb|GR847194.1|GR847194
EST:     CTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCCGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|21256067|gb|BQ452955.1|BQ452955
EST:     CTAT-AATAATTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|16995877|gb|BM085249.1|BM085249
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|21285946|gb|BQ473817.1|BQ473817
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|7326801|gb|AW620599.1|AW620599
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|22521828|gb|BU080639.1|BU080639
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|17519308|gb|BM188350.1|BM188350
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|6455258|gb|AW185941.1|AW185941
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|298172883|gb|HO019867.1|HO019867
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|18038975|gb|BM307269.1|BM307269
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|15336976|gb|BI497632.1|BI497632
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|19345951|gb|BM890831.1|BM890831
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|13562826|gb|BG551046.1|BG551046
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|207718410|gb|GD700416.1|GD700416
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTACCAAAGCTACATT
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATT-CCAA-GCTACATT
EST: gi|19270723|gb|BM886979.1|BM886979
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|27809327|gb|CB063749.1|CB063749
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|6482030|gb|AW201301.1|AW201301
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|23064316|gb|BU579081.1|BU579081
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|16347115|gb|BI972710.1|BI972710
EST:     CTATCAAAAACTATGTATCTCGAAAATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|298179445|gb|HO027916.1|HO027916
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|15200563|gb|BI424413.1|BI424413
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|192312364|gb|FK005368.1|FK005368
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|192295843|gb|FG990881.1|FG990881
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|15203113|gb|BI425881.1|BI425881
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|254317511|gb|GR826495.1|GR826495
EST:     GATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCT-GCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: GATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|6963922|gb|AW432615.1|AW432615
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|15285867|gb|BI469758.1|BI469758
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|298166969|gb|HO010408.1|HO010408
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|298164387|gb|HO014032.1|HO014032
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|298197945|gb|HO039484.1|HO039484
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|19347531|gb|BM892411.1|BM892411
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|192325398|gb|FK018369.1|FK018369
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|7234439|gb|AW569776.1|AW569776
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|20207974|gb|BQ134063.1|BQ134063
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|27426112|gb|CA937632.1|CA937632
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|11274538|gb|BF324884.1|BF324884
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|298191544|gb|HO039023.1|HO039023
EST:     CTATCATATACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAGGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|213603624|gb|DB966780.1|DB966780
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|192321351|gb|FK012112.1|FK012112
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|192312363|gb|FK005367.1|FK005367
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|254335665|gb|GR847193.1|GR847193
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|14258722|gb|BG881630.1|BG881630
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|298174968|gb|HO014885.1|HO014885
EST:     CTATCAAAAACTGTGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|15000837|gb|BI321651.1|BI321651
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|298166706|gb|HO010145.1|HO010145
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|254344521|gb|GR851218.1|GR851218
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|298172675|gb|HO019715.1|HO019715
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACGGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|254318765|gb|GR830329.1|GR830329
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|7924237|gb|AW830263.1|AW830263
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAN
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|12690087|gb|BG156423.1|BG156423
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|254317510|gb|GR826494.1|GR826494
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|4291546|gb|AI441777.1|AI441777
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|14259139|gb|BG882047.1|BG882047
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCACGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|13788156|gb|BG650748.1|BG650748
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|23053072|gb|BU577563.1|BU577563
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|254344522|gb|GR851219.1|GR851219
EST:     CTATC-AAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
EST: gi|11412380|gb|BF424391.1|BF424391
EST:     CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG                         GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG
genomic: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagataca ... ttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttttttttctcccggtgttcctaatgttcatcttttcatgttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA
                       tcctaat  putative branch site (score: 2)
                                   tcttttcatgttttc  putative PPT
     ttttttttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgggttttagttcaattaatgacacaccttcttttgactggtggagttttttttttttctcccggtgttcctaatgttcatcttttcatgttttcgacagGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-gggtttt
- - - - - - - - - - -acacacc
- - - - - - - - - - - - - - - - - - - tggtgga