1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagaatatcctataaagtcagtaactttacagtattgctctatactatacagctccagtttcggctgttattttgatactctgtaaacttatatttatagAATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAG
species | Glycine max |
transcript | GLYMA11G01340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCTTTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTC AATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATEST: gi|17519493|gb|BM188535.1|BM188535
genomic: CCGCATTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTCgtaatgcttc ... atatttatagAATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAAT
EST: CCGCATTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTC AATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATEST: gi|213593699|gb|DB971721.1|DB971721
genomic: CCGCATTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTCgtaatgcttc ... atatttatagAATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAAT
EST: CCGCATTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTC AATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATEST: gi|192326479|gb|FK017256.1|FK017256
genomic: CCGCATTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTCgtaatgcttc ... atatttatagAATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAAT
EST: CCGCATTGAAGGAGGCTTTTTCCAGACATACTCAGTGTCTCAATGACCTC AATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATEST: gi|151394898|gb|EV264769.1|EV264769
genomic: CCGCATTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTCgtaatgcttc ... atatttatagAATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAAT
EST: CCAGATATACTCAGTGTCTCAATGACCTC AATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGGATEST: gi|298182210|gb|HO026385.1|HO026385
genomic: CCAGATATACTCAGTGTCTCAATGACCTCgtaatgcttc ... atatttatagAATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAAT
EST: CCGCTTTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTC AATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATEST: gi|298174665|gb|HO014696.1|HO014696
genomic: CCGCATTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTCgtaatgcttc ... atatttatagAATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAAT
EST: CCGCTTTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTC AATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAAT
genomic: CCGCATTGAAGGAGGCTTTTTCCAGATATACTCAGTGTCTCAATGACCTCgtaatgcttc ... atatttatagAATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAAT
tatacagctccagtttcggctgttattttgatactctgtaaacttatatttatagAATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAG
ttttgat putative branch site (score: 4)
tgtaaacttatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaatatcctataaagtcagtaactttacagtattgctctatactatacagctccagtttcggctgttattttgatactctgtaaacttatatttatagAATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - ctccagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgta