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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctacacacttatttcaattctctcatttctgctaattataatttgcaccttcactccagtactatcactatacataataataatacatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG

Basic information

species Glycine max
transcript GLYMA11G00980.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0041g02270.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------------------------------------gtacctacacactta-tttcaattctctcatttctgctaattataatttgcaccttcactccagtactatcactatacataataataatacatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG
                                                               || |  |  ||| || |||| | | | |   | | | |  ||     || ||  |||  |    |  | ||  | |    |||  |   | || |  ||||||||||| ||||| ||||||||||||||| | |||||  |||| |||||||| ||||| ||||  || ||||| ||||| |||||||| |||||||||
gtacttgtagaagaagtcattttctgaagttccattcattttctaaatgaatataaacaaaatgtgctcaagcacatactttctagtgttttgataccgatg-ttggccctttcaatttcgttattttgttttctttttttggaattttc-catatttttagGTATCCACATACACCGGGCATATGGACAAAAGAACAAGTTGAAGCATGGAAACCTATTGTAGATGATGTACATGCTAAAGGCGGTATCTTTTTTTGTCAG

upper sequence: GLYMA11G00980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0041g02080.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------------------------------------gtacctacacacttatt-tcaattctctcatttctgctaattataatttgcaccttcactccagtactatcactatacataataataatacatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG
                                                            || |  |  ||| || | || | | | |   |  || |  ||     || ||  |||  |    |  | ||  | |    |||  |   | || |  |||||||| || ||||| ||||||||||||||| | |||||  |||| |||||||| ||||| ||||| || ||||| ||||| |||||||| |||||||||
gtacttgtagaagtcattttctgaagttccattcattttctaaatgaaaataaacaaaatgtgctcaagcacatactctccagtgttttgatattgatg-ttggccctttcaatttcgttgttttcttttctttttttcgaattttc-catatttttagGTATCCCCATACACCGGGCATATGGACAAAAGAACAAGTTGAAGCATGGAAACCTATTGTCGATGCTGTACATGCTAAAGGCGGTATCTTTTTTTGTCAG

upper sequence: GLYMA11G00980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0041g02050.t01 (Vitis vinifera), 3'ss of exon 1
----------------gtacctacaca-cttatttcaattctctcatttctgctaattataatttg--caccttcactccagtactatcactatacataataataatacatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG
                 ||| | | || ||| | |  ||| ||| | ||    |||  |  || ||  ||  || |      ||  || | |   |    |  |   |  | |  || ||| |||| || || || |||||||||||| |||||||  |||| ||||| |||||||| ||||| |||||||| |||||  |||||||  ||||||||
gtaattacagcaaacactactttctcaacttctgttcattttctaagtttaaataaaaaatatatgatcaagttgatagatataagattaattatctggtttttcccatctatgtagCTATGCACATACCCCGGGTATATGGACAAAAGAGCAAGTTGAAGCCTGGAAGCCCATTGTAGATGCTGTTCATGCTAAAGGCAGTATCTTTATTTGTCAG

upper sequence: GLYMA11G00980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0041g02040.t01 (Vitis vinifera), 3'ss of exon 3
gtacctacacacttatttcaattctctcatttctgctaattataatttgcaccttcactccagtactatcactatacataataataatacatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG-------------------------------
                                                                                                                   | |||||||||||| |||||||  |||| ||||| |||||||| ||||| |||||||| |||||  |||||||  ||||||||                               
-------------------------------------------------------------------------------------------------------------------gtatatggacaaaagagcaagttgaagcctggaagcccattgtagatgctgttcatgctaaaggcagtatctttatttgtcagCTTTGGCATGTGGGAAGAGTTTCAAACACAG

upper sequence: GLYMA11G00980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0041g02070.t01 (Vitis vinifera), 3'ss of exon 2
gtacctacacacttatttcaattctctcatttctgctaattataatttgcaccttcactccagtactatcactatacataataataat-acatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG
                   ||||    ||  |    | |   |   |||    || |     |||  || | | ||  |  |  |    || | |  || ||| |||| || || || |||||||||||| |||||||  |||| ||||| |||||||| ||||| |||||||| |||||  |||||||  ||||||||
-----------------gtaattacagcaaatacttttacctt--cttgtgttttgatagatgtaagattaat-tatttggttttccccacctatgcagCTATGCACATACCCCGGGTATATGGACAAAAGAGCAAGTTGAAGCCTGGAAGCCCATTGTAGATGCTGTTCATGCTAAAGGCAGTATCTTTATTTGTCAG

upper sequence: GLYMA11G00980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0041g02010.t01 (Vitis vinifera), 3'ss of exon 2
----------------gtacctacaca-cttatttcaattctctcatttctgctaattata-atttg--caccttcactccagtactatcactatacataataataatacatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG
                 ||| | | || ||| | |  ||| ||| | ||    |||  | | || ||  ||  || |      ||  || | |   |    |  |   |  | |  || ||| |||| || || || |||||||||||| |||||||  |||| ||||| |||||||| ||||| |||||||| |||||  |||||||   |||||||
gtaattacagcaaacactactttctcaacttctgttcattttctaagtttaaataaaaaaatatatgatcaaattgatagatataagattaattatctggtttttcccatctatgtagCTATGCACATACCCCGGGTATATGGACAAAAGAGCAAGTTGAAGCCTGGAAGCCCATTGTAGATGCTGTTCATGCTAAAGGCAGTATCTTTAATTGTCAG

upper sequence: GLYMA11G00980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0041g02060.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------------------------------------gtacctacacacttatttcaattctctcatttctgctaattataatttgcaccttcactccagtactatcactatacataataa---taatacatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG
                                                                 |  |   | |        | | ||   | | |    |||    || || |  ||  |   ||  | | | | ||  |    |   |   | || |  ||||||||| | ||||| ||||||||||||||| | |||||  |||| |||||||| ||||| ||||| |||||||| ||||| |||||||| |||||||||
gtaattgtagaagaagtcattttctgaagttccattcattttctaaatgaaaaaaaaaaaatgcaaaatgtgctcgagcacatactttccagtgttttgatattgatgttggccctgtcgtttttgttattttattttatttttggaattttccatatttttagGTATCCAAATACACCAGGCATATGGACAAAAGAACAAGTTGAAGCTTGGAAACCTATTGTAGATGCTGTTCATGCTAAAGGCGGTATCTTTTTTTGTCAG

upper sequence: GLYMA11G00980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0041g02020.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------------------------------------gtacctacacactta-tttcaattctctcatttctgctaattataatttgcaccttcactccagtactatcactatacataataataat----acatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG
                                                               || |     ||| || |||| | | | |   |  || |  ||     |  |   ||   |    || | ||  | | | |  |   | |    | || |  ||||||||||| ||||| ||||||||||||||| | |||||  |||| |||||||| ||||| ||||| || ||||| ||||| |||||||| |||||||||
gtaattgtagaagaagtcattttctgaagttccattccttttctaaatgaaaataaacaaaatgtgctcgagcacatactttccagtgttttgatattgatg-ttggccctgtcgtttttgtttttttattttcttttttctttttggaattttccatatttttagGTATCCACATACACCAGGCATATGGACAAAAGAACAAGTTGAAGCATGGAAACCTATTGTAGATGCTGTACATGCTAAAGGCGGTATCTTTTTTTGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgcaccttcactccagtactatcactatacataataataatacatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG
                       tatcactatacataat  TA-rich tract