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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttacttgctactggtgattcggtgtacatgcaatttaaattgctgagcttagtttgggcatatatagatggtaatgcgatggctattttaaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGATCTCCAAGGGGATGAAGACCACTCCTTCAAGAAGATTCGTTTGAGAGCTG

Basic information

species Glycine max
transcript GLYMA11G00890.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180407|gb|HO021960.1|HO021960
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|207762830|gb|GD734713.1|GD734713
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGG
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGG
EST: gi|6455572|gb|AW186255.1|AW186255
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|58023319|gb|CX710060.1|CX710060
EST:     AATATT-GCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|6072640|gb|AW102027.1|AW102027
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|24135455|gb|BU925965.1|BU925965
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|298168802|gb|HO009732.1|HO009732
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|209702288|gb|BW652368.1|BW652368
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|15813962|gb|BI786237.1|BI786237
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|6072903|gb|AW102290.1|AW102290
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|298174443|gb|HO014588.1|HO014588
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|8826958|gb|BE210688.1|BE210688
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|298179710|gb|HO024925.1|HO024925
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|298170667|gb|HO019291.1|HO019291
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|23727546|gb|BU761807.1|BU761807
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGATTGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|193608814|gb|FK566032.1|FK566032
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|207762323|gb|GD734262.1|GD734262
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|192307342|gb|FK000726.1|FK000726
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|298194378|gb|HO041026.1|HO041026
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|4292422|gb|AI437760.1|AI437760
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|37995080|gb|CF806669.1|CF806669
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|13791308|gb|BG653899.1|BG653899
EST:     CTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: CTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|298193302|gb|HO033736.1|HO033736
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|7458646|gb|AW666096.1|AW666096
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|208288367|gb|GE086116.1|GE086116
EST:     TGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: TGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|298187904|gb|HO031861.1|HO031861
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|19053253|gb|BM731920.1|BM731920
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|23727433|gb|BU761746.1|BU761746
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCTATTGTCTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|298187155|gb|HO034304.1|HO034304
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGGGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|7685314|gb|AW755962.1|AW755962
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|4313563|gb|AI460682.1|AI460682
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|17021860|gb|BM092894.1|BM092894
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|298170351|gb|HO018975.1|HO018975
EST:     CAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: CAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|11688279|gb|BF595955.1|BF595955
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|207703727|gb|GD686291.1|GD686291
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|19269561|gb|BM885817.1|BM885817
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|213607261|gb|DB957125.1|DB957125
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|208200391|gb|GD997678.1|GD997678
EST:     TGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: TGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|57575225|gb|CX548200.1|CX548200
EST:     TCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: TCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|7285795|gb|AW598282.1|AW598282
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|298176257|gb|HO015662.1|HO015662
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|192317788|gb|FK010178.1|FK010178
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|193327655|gb|FK297358.1|FK297358
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGG
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGG
EST: gi|192308959|gb|FK001735.1|FK001735
EST:     AGGTCAAGAATA-TGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|23727850|gb|BU761961.1|BU761961
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAATGTACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGA
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAA-GGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGA
EST: gi|51335530|gb|CO979396.1|CO979396
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|58022183|gb|CX708924.1|CX708924
EST:     CAAGAATATT-GCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: CAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|192308958|gb|FK001734.1|FK001734
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|193458171|gb|FK422490.1|FK422490
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGG
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGG
EST: gi|23064624|gb|BU579397.1|BU579397
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCTAATGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT
EST: gi|4437091|gb|AI522956.1|AI522956
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCATCCGAAGGACTCAAACATCGCGTTTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgtttttattt ... taaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagcttagtttgggcatatatagatggtaatgcgatggctattttaaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGATCTCCAAGGGGATGAAGACCACTCCTTCAAGAAGATTCGTTTGAGAGCTG
                                       ctatttt  CT-rich tract
                                        tattttaaacaaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttacttgctactggtgattcggtgtacatgcaatttaaattgctgagcttagtttgggcatatatagatggtaatgcgatggctattttaaacaacagATTGCATCCGAAGGACTCAAACATCGGGTTTTTGAGGTCTCATTGGCTGATCTCCAAGGGGATGAAGACCACTCCTTCAAGAAGATTCGTTTGAGAGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - -tgctact
- - - - - - - ggtgatt
- - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - -ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaatgc