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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcacattgcgggtggtgacattttgttatatgaatattaatgatattaatataataacatttctggctatgtgcttataattgttttatagtgccttctgccttgtacctgtaaagtttgatatgttcctttgcagGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTT

Basic information

species Glycine max
transcript GLYMA11G00680.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00680.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0020g03060.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------------gtaagatcacattgcgggtggtgacatt-ttgttatatgaatattaatgatattaatataa--taacatttctggctatgtgcttataattgttttatagtgccttctgccttgta-------cctg--taaagtttgatatgttcctttgcagGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTT
                                     |||  |     |  |  || |  |||  ||  || |||  | | ||   ||||| |  ||  ||     | | | |||     |||  |  ||||  |    ||| |       |        ||   | || | || | |||  |||| ||||||||||||||| ||||| || ||||||||| | |||||||| |||||||||||||| || |||||||||||||| ||||||
gtaagttctttatgatgcgtatgtttatttatgctgataactttctgattagattgtttgcataattactaaatggttctaaaaactattagttgaagttatttagtttagttattcatatattctaattttggaactacttatcaaaaaaaaaaaaattctaatttaactgtgttgtgtatcttt-cagGCCTCAAACTACTATTGGAACTGCCATGGTTTTATGCCACCGCTTTTTTGTTCGACGTTCGCATGCTTGCCATGATAGATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23734526|gb|BU765499.1|BU765499
EST:     CGCTACTCTTACTGTGCCTTCCTTCAAAATCTTGGGATGTGGCTCAACTT                         GCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGT
genomic: CGCTACTCTTACTGTGCCTTCCTTCAAAATCTTGGGATGTGGCTCAACTTgtaagatcac ... tcctttgcagGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGT
EST: gi|17021043|gb|BM092077.1|BM092077
EST:     CGCTACTCTTACTGTGCCTTCCTTCAAAATCTTGGGATGTGGCTCAACTT                         GCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGT
genomic: CGCTACTCTTACTGTGCCTTCCTTCAAAATCTTGGGATGTGGCTCAACTTgtaagatcac ... tcctttgcagGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttatagtgccttctgccttgtacctgtaaagtttgatatgttcctttgcagGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTT
                                  gtttgat  putative branch site (score: 5)
                                          tgttccttt  CT-rich tract
                              taaagttt  TA-rich tract