1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atcataaatgatagccacgttctcattctcatatcttcactttgaattttcactgcttctgctttttagttgttaattttctcgttatttatggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTTCACAACAAACACTACTCAAGGGAAGTGAAAATGTCAGTGGTGGTTGTGG
species | Glycine max |
transcript | GLYMA11G00210.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAA ATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTTEST: gi|192308012|gb|FG998995.1|FG998995
genomic: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggtttt ... atggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT
EST: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAA ATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTTEST: gi|209717746|gb|BW654034.1|BW654034
genomic: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggtttt ... atggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT
EST: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAA ATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTTEST: gi|61241601|gb|DN590994.1|DN590994
genomic: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggtttt ... atggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT
EST: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAA ATATCAGAACTGAGCATGATTCCTGTGGGTTGTGTGATGGAATGGATACTT
genomic: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggtttt ... atggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT
attttcactgcttctgctttttagttgttaattttctcgttatttatggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTTCACAACAAACACTACTCAAGGGAAGTGAAAATGTCAGTGGTGGTTGTGG
tgttaat putative branch site (score: 3)
tttttagttgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcataaatgatagccacgttctcattctcatatcttcactttgaattttcactgcttctgctttttagttgttaattttctcgttatttatggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTTCACAACAAACACTACTCAAGGGAAGTGAAAATGTCAGTGGTGGTTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG