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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctatctactttctatctatattctttatttttattttctctctttttttctttcttaaaccaaacatagggtatatttgtttctttttattcttttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAG

Basic information

species Glycine max
transcript GLYMA10G43810.4
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43810.4 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g15050.t01 (Vitis vinifera), 3'ss of exon 2
ttctatctactttct--atctatattctttatttttattttctctctttttttctttcttaaaccaaacatagggtatatttgtttctt-tttattct--tttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAG
    | ||| ||| |  ||    ||     |  |||   ||     |      ||||  ||    || ||| |  | | ||||  | || |||  ||   ||||||||| ||||||||  | || || ||||| || ||||||||||| || |||||||| |||||||||||  | || |||||||| |||||| | || || |
--gaaactaatttttgcattgggatggggaaagtttgagtttggcttaccccgctttacta---taatcattgtttttttttggatgttgtttgctccaatttagGTCATGGAGGTTCAAGAACCGCGGAATACCTCAAAAACAATCTTTTCAAGAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315402|gb|FK009204.1|FK009204
EST:     AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATG                         GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGA
genomic: AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATGgtaagtctaa ... attcttttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGA
EST: gi|298180459|gb|HO022012.1|HO022012
EST:     AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATG                         GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAATAATCTGTTTAAGA
genomic: AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATGgtaagtctaa ... attcttttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGA
EST: gi|207834145|gb|GD808958.1|GD808958
EST:     ATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTTCGATG                         GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAG
genomic: ATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTG-TTTTCGATGgtaagtctaa ... attcttttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAG
EST: gi|298191566|gb|HO039045.1|HO039045
EST:     AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATG                         GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAATAATCTGTTTAAGA
genomic: AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATGgtaagtctaa ... attcttttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttctttcttaaaccaaacatagggtatatttgtttctttttattcttttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAG
                              tatttgtttcttttta  CT-rich tract
                            tatatttgtttctttt  TA-rich tract