1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtctctgataaaataacctggacatttttgtttattgtgtttttttagccatagcattaaattttgatcattttctaagagtcctgcattattttgtagGATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGATTTGCAGAGAAAAATTGCTGATGAATTGGACAGAACCCCTGGAGAGATAC
species | Glycine max |
transcript | GLYMA10G43750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAG GATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGATEST: gi|254314182|gb|GR831811.1|GR831811
genomic: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAGgtatacctaa ... tattttgtagGATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGAT
EST: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAG GATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGAT
genomic: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAGgtatacctaa ... tattttgtagGATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGAT
ttagccatagcattaaattttgatcattttctaagagtcctgcattattttgtagGATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGATTTGCAGAGAAAAATTGCTGATGAATTGGACAGAACCCCTGGAGAGATAC
ttttgat putative branch site (score: 4)
ttatttt putative PPT
attaaattttgatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctctgataaaataacctggacatttttgtttattgtgtttttttagccatagcattaaattttgatcattttctaagagtcctgcattattttgtagGATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGATTTGCAGAGAAAAATTGCTGATGAATTGGACAGAACCCCTGGAGAGATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
-gtctctg
- - - - - aaaataa
- - - - - - - - -cctggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctgca