1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcccacgcttctcctaaccctcttttttcattcattcgttctcgtcaatcgtattattttatttttttgttttctctatctggtcgatcatttagGATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGTTGTGTCAACACTGTGAGCTTCAATGCAGATGGTGACACTCTAGTCTCCG
species | Glycine max |
transcript | GLYMA10G43020.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGGCCACCTTCCCCCAAGGAATTTCGCTCTCCGTCTTGGCGCCTCCGAG GATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGTEST: gi|4395996|gb|AI494993.1|AI494993
genomic: TCGGCCACCTTCCCCCAAGGAATTTCGCTCTCCGTCTTGGCGCCTCCGAGgtcccacgct ... gatcatttagGATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGT
EST: TCGGCCACCTTCCCCCAAGGAATTTCGCTCTCCGTCTTGGCGCCTCCGAG GATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGTEST: gi|151395308|gb|EV265179.1|EV265179
genomic: TCGGCCACCTTCCCCCAAGGAATTTCGCTCTCCGTCTTGGCGCCTCCGAGgtcccacgct ... gatcatttagGATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGT
EST: TCGGCCACCTTCCCCCAAGGAATTTCGCTCTCCGTCTTGGCGCCTCCGAG GATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGTEST: gi|213608078|gb|DB972588.1|DB972588
genomic: TCGGCCACCTTCCCCCAAGGAATTTCGCTCTCCGTCTTGGCGCCTCCGAGgtcccacgct ... gatcatttagGATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGT
EST: TCGGCCACCTTCCCCCAAGGAATTTCGCTCTCCGTCTTGGCGCCTCCGAG GATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGTEST: gi|193377748|gb|FK343232.1|FK343232
genomic: TCGGCCACCTTCCCCCAAGGAATTTCGCTCTCCGTCTTGGCGCCTCCGAGgtcccacgct ... gatcatttagGATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGT
EST: TCGGCCACCTT-CCCCAAGGAATTTCGCTCTCCGTCTTGGCGCCTCCGAG GATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGT
genomic: TCGGCCACCTTCCCCCAAGGAATTTCGCTCTCCGTCTTGGCGCCTCCGAGgtcccacgct ... gatcatttagGATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGT
ctcgtcaatcgtattattttatttttttgttttctctatctggtcgatcatttagGATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGTTGTGTCAACACTGTGAGCTTCAATGCAGATGGTGACACTCTAGTCTCCG
tattattttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcccacgcttctcctaaccctcttttttcattcattcgttctcgtcaatcgtattattttatttttttgttttctctatctggtcgatcatttagGATCTTGTCCTTCGACTTGAATTACTGAGGAATCTGCAAAAACACAGAGGTTGTGTCAACACTGTGAGCTTCAATGCAGATGGTGACACTCTAGTCTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG