1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctcgaatgcatgggtgccttgcatcagatgtaatagagggaaaaggttgtgtttttggtcatgaaagttatttaattgtgattagaaattgtggggtcagGATGCTGCGATGGGGCTGGTGCTGAGTGCTGCGACGGGCAGAGGATGGACCACGGGTTCAGGGATGGAAGGCCCCTCTGTTCCTGCAGTTGGTAGGGATA
species | Glycine max |
transcript | GLYMA10G43010.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCCAATTCTTAGTGATCGCTGCCTCTCTCTTTCCCCTCTTTCCAAA GATGCTGCGATGGGGCTGGTGCTGAGTGCTGCGACGGGCAGAGGATGGACCEST: gi|192304793|gb|FG995015.1|FG995015
genomic: AGCTTCCAATTCTTAGTGATCGCTGCCTCTCTCTTTCCCCTCTTTCCAAAgtacgtcgtt ... gtggggtcagGATGCTGCGATGGGGCTGGTGCTGAGTGCTGCGACGGGCAGAGGATGGACC
EST: AGCTTCCAATTCTTAGTGATCGCTGCCTCTCTCTTTCCCCTCTTTCCAAA GATGCTGCGATGGGGCTGGTGCTGAGTGCTGCGACGGGCAGAGGATGGACC
genomic: AGCTTCCAATTCTTAGTGATCGCTGCCTCTCTCTTTCCCCTCTTTCCAAAgtacgtcgtt ... gtggggtcagGATGCTGCGATGGGGCTGGTGCTGAGTGCTGCGACGGGCAGAGGATGGACC
gttgtgtttttggtcatgaaagttatttaattgtgattagaaattgtggggtcagGATGCTGCGATGGGGCTGGTGCTGAGTGCTGCGACGGGCAGAGGATGGACCACGGGTTCAGGGATGGAAGGCCCCTCTGTTCCTGCAGTTGGTAGGGATA
atttaat putative branch site (score: 4)
aaagttatttaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcgaatgcatgggtgccttgcatcagatgtaatagagggaaaaggttgtgtttttggtcatgaaagttatttaattgtgattagaaattgtggggtcagGATGCTGCGATGGGGCTGGTGCTGAGTGCTGCGACGGGCAGAGGATGGACCACGGGTTCAGGGATGGAAGGCCCCTCTGTTCCTGCAGTTGGTAGGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- -gaatgca
- - - - - - - - ccttgca
- - - - - - - - - - - - - - - - - -gagggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa