1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tccttcatgtatttacttgtgttttgaacccatttttctgcacattattatcgaataatgaaaattgataaacatattctttctctattttaaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCACTCCAAGCAACAGAAGAGGGGTTTATTTCAGTGGTTGCCAGACAGTTTTC
species | Glycine max |
transcript | GLYMA10G42910.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCACEST: gi|208309645|gb|GE107203.1|GE107203
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCACEST: gi|193668582|gb|FK608956.1|FK608956
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCACEST: gi|15814409|gb|BI786684.1|BI786684
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCACEST: gi|193481538|gb|FK445565.1|FK445565
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA GATTTACTTCAGAGCAAEST: gi|208307540|gb|GE107568.1|GE107568
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAA
EST: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
tattatcgaataatgaaaattgataaacatattctttctctattttaaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCACTCCAAGCAACAGAAGAGGGGTTTATTTCAGTGGTTGCCAGACAGTTTTC
aattgat putative branch site (score: 4)
tattctttctctattt putative PPT
aaaattgataaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttcatgtatttacttgtgttttgaacccatttttctgcacattattatcgaataatgaaaattgataaacatattctttctctattttaaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCACTCCAAGCAACAGAAGAGGGGTTTATTTCAGTGGTTGCCAGACAGTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - -catgtat
- - - - - - - acttgtg
- - - - - - - - - - - - - - - - - - - tgcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaac