1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttgtttgtcattaatggtgtgttgtatgtatcctgctagttcccattgattaagttgattgaacattctgtccaattcatgctgtgattattttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTATTTCATATTGCATACCCTAGCGCACCAGAAACATCAAAGACAGAGTTGA
species | Glycine max |
transcript | GLYMA10G42250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAAATGAGGGAGAGTGATTTGGGTTGAATATTACATCCCGTTGGTGAAG AGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTAEST: gi|209719391|gb|BW674471.1|BW674471
genomic: TCAAATGAGGGAGAGTGATTTGG-TTGAATATTACATCCCGTTGGTGAAGgtcagctaac ... ttttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTA
EST: CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAG AGATTGGCAGCANGTGAATGGTTTACTGCTCGAGTCTCTGCATGTEST: gi|254343717|gb|GR857473.1|GR857473
genomic: CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaac ... ttttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGT
EST: CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAG AGATTGGCAGCAG-TGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTAEST: gi|23725947|gb|BU760948.1|BU760948
genomic: CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaac ... ttttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTA
EST: CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAG AGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTA
genomic: CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaac ... ttttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTA
ttgattaagttgattgaacattctgtccaattcatgctgtgattattttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTATTTCATATTGCATACCCTAGCGCACCAGAAACATCAAAGACAGAGTTGA
ttttgttc CT-rich tract
attattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttgtcattaatggtgtgttgtatgtatcctgctagttcccattgattaagttgattgaacattctgtccaattcatgctgtgattattttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTATTTCATATTGCATACCCTAGCGCACCAGAAACATCAAAGACAGAGTTGA
-tgtttgt
- - - - - - - tggtgtg
- - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - tcctgct
- - - - - - - - - - - - - - - - - - - - -cccattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgct