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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttttcttttatttctttcttttttaaaaactactacacattggccttttgaagttatcgaaatatattccattattttgttgcatatattatgttgttgtttaaattttatgaactactggtttgcaataattatattcatttattctgctctaaattacaattatgtgcttaaaatatgctagAGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAG

Basic information

species Glycine max
transcript GLYMA10G42180.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587005|gb|DB959510.1|DB959510
EST:     AGGAGAATAAAGTAGTTGAAAATACTTTCATTGTAATTATGCTATCAAAG                         AGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACC
genomic: AGGAGAATAAAGTAGTTGAAAATACTTTCATTGTAATTATGCTATCAAAGgtaatttttt ... aatatgctagAGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACC
EST: gi|192297148|gb|FG988244.1|FG988244
EST:     AGGAGAATAAAGTAGTTGAAAATACTTTCATTGTAATTATGCTATCAAAG                         AGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACC
genomic: AGGAGAATAAAGTAGTTGAAAATACTTTCATTGTAATTATGCTATCAAAGgtaatttttt ... aatatgctagAGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACC
EST: gi|26056311|gb|CA799225.1|CA799225
EST:     AGGAGAATAAAGTAGTTGAAAATACTTTCATTGTAATTATGCTATCAAAG                         AGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCACCATCAACC
genomic: AGGAGAATAAAGTAGTTGAAAATACTTTCATTGTAATTATGCTATCAAAGgtaatttttt ... aatatgctagAGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACC
EST: gi|298187376|gb|HO034525.1|HO034525
EST:     AGGAGAATAAAGTAGTTGAAAATACTTTCATTGTAATTATGCTATCAAAG                         AGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACC
genomic: AGGAGAATAAAGTAGTTGAAAATACTTTCATTGTAATTATGCTATCAAAGgtaatttttt ... aatatgctagAGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattatattcatttattctgctctaaattacaattatgtgcttaaaatatgctagAGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAG
                    ctctaaa  putative branch site (score: 3)
                       taaattacaattatgt  TA-rich tract