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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaagtttattgcttaattgacatacaagatactctgcaatttttgctttcccactgttatttctctgatgcgtgttggatgatttatctgtttttacagGTTCAATATTGTTGGCCAG

Basic information

species Glycine max
transcript GLYMA10G41560.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412568|gb|EV282380.1|EV282380
EST:     AAGCTTGCTGGGCCCAGATGGGCACCCTTTGCTTCCTGGATTACTGGCTG                         GTTCAATATTGTTGGCCAG
genomic: AAGCTTGCTGGGCCCAGATGGGCACCCTTTGCTTCCTGGATTACTGGCTGgtaccatacc ... gtttttacagGTTCAATATTGTTGGCCAG
EST: gi|192299751|gb|FG990046.1|FG990046
EST:     AAGCTTGCTGGGCCCAGATGGGCACCCTTTGCTTCCTGGATTACTGGCTG                         GTTCAATATTGTTGGCCAG
genomic: AAGCTTGCTGGGCCCAGATGGGCACCCTTTGCTTCCTGGATTACTGGCTGgtaccatacc ... gtttttacagGTTCAATATTGTTGGCCAG
EST: gi|10234703|gb|BE803591.1|BE803591
EST:     AAGCTTGCTGGGCCCAGATGGGCACCCTTTGCTTCCTGGATTACTGGCTG                         GTTCAATATTGTTGGCCAG
genomic: AAGCTTGCTGGGCCCAGATGGGCACCCTTTGCTTCCTGGATTACTGGCTGgtaccatacc ... gtttttacagGTTCAATATTGTTGGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttcccactgttatttctctgatgcgtgttggatgatttatctgtttttacagGTTCAATATTGTTGGCCAG
                  ctctgat  putative branch site (score: 4)
                                          tctgttttt  putative PPT
                                     atttatctgttttta  TA-rich tract