Sequence
atgc intronic sequence ATGC exonic sequence...ggttgaatgatagtctcttcttgtgactataatgaagttcttacaaatttaattatttatggtgttaccattggattgaattcatattggcttcttgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCCGACCCTTATAAAGTTTCTCAATATAATCGTTGGACTTCCCC
Basic information
species | Glycine max |
transcript | GLYMA10G40730.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G40730.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G49820.1 (Arabidopsis thaliana), 3'ss of exon 2
ggttgaatgatagtctcttcttgtgactataatgaagttcttacaaatttaattat-ttatggtgttaccattggattgaattcatattggcttcttgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCCGACCCTTATAAAGTTTCTCAATATAATCGTTGGACTTCCCC
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------------------gttcaaaaccctcacatctattttatttactagtcaatgttatcgtgttgc--ttgtagtgagtgtcttttgtgtttgtgtagTAACCGAATTTTGTGGTAATGTGGAGTTATGCCGATTAACGGAGCAAGTTGTGTTTTCGGACCCATATAGAGTTTCCACATTTAATCGTTGGACTTCACC
upper sequence: GLYMA10G40730.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0091g00080.t01 (Vitis vinifera), 3'ss of exon 2
ggttgaatgatagtctcttcttgtgactataatgaagttc-ttacaaatttaattatttatggtgttaccattggattgaattcatattg-gcttcttgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCCGACCCTTATAAAGTTTCTCAATATAATCGTTGGACTTCCCC
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gagtaattactggtagaatgt-acgagaaaattgcagtttgcttctgatgaagttattc-tattgacaagattgaatcatgttcaaattgtgctttatgcagTTGCTGAATTTTGTGGTAATGTGGAGTTATGTCGGCTCACTGAGCAAGTTGTGTTCTCTGATCCATACAAAGTATCTCAGTACAATCGGTGGACTTCTCC
upper sequence: GLYMA10G40730.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0091g00100.t01 (Vitis vinifera), 3'ss of exon 2
ggttgaatgatagtctcttcttgtgactataatgaagttc-ttacaaatttaattatttatggtgttaccattggattgaattcatattg-gcttcttgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCCGACCCTTATAAAGTTTCTCAATATAATCGTTGGACTTCCCC
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gagtaattactggtagaat-ttaagagaaaattgcagtttgcttctgatgaagttattc-tattgacaaacttgaatcatgttcaaattgtgctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGTTTTCTCTGATCCATACAAAGTATCTCAGTATAATTGGTGGACTTCCCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33388365|gb|CA851572.1|CA851572EST: CTTCTTCACGNCTGTGNTTTTCCGTTCCACATCTGACCACAAACGAGACG TTGCCGAATTTTGTGGGAATGNGGAGTTATGCAGGCTCACTGAGCAGGTTG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACGgtataacctc ... cttcttgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttaattatttatggtgttaccattggattgaattcatattggcttcttgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCCGACCCTTATAAAGTTTCTCAATATAATCGTTGGACTTCCCC
atttaat putative branch site (score: 4)
cttcttgc putative PPT
attgaattcatatt TA-rich tract