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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaatttattttaccctagttctcatttctgtcatctttgatgttacattaattcatgaaaggggtttggaaaatgttagcttcaaactaatgcttatgatgtcttaatttgttatctaattacagATGTGACTGGAAAAGCCATAGAAGAGACTGCAGCAGTTGTATTGAGGCTGTACCATGACAGGAAGCACATATGCACCATGCCAAGGATCTCAAAACGCTA

Basic information

species Glycine max
transcript GLYMA10G39830.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39830.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv10s0116g00390.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------gtaacaaatttattttaccctag-ttctcatttctgtcatct----ttgatg-ttacattaattcatgaaaggggt------ttggaaaatgttag------cttcaaactaatgctta---tgatgtcttaat-ttgtta-----tctaattacagATGTGACTGGAAAAGCCATAGAAGAGACTGCAGCAGTTGTATTGAGGCTGTACCATGACAGGAAGCACATATGCACCATGCCAAGGATCTCAAAACGCTA
                               |  ||  |   || ||||  |  ||||||  |  |   ||     |||| | ||| |  | || |  ||| |          || |||||| |         |  ||| |  ||| |    | || || | || ||||||     | | ||| |||| ||||| |||||||| || ||||| |||||||||||||||||||| || ||||||||| ||||||| |  ||| | |||||||| ||||| ||||| ||
gtgagagattagcatgtcatgtttttcttatttgcatttggtttctacctcatcttctcaacttcgatttccaaacttgaagcttaaaacagttaagaaaaagaagaggatgctgaaaaatgatgaacagcattgtaaattgttgcctggtttaatatcgtcatattgttacatgctgtgattgcagAAGTGACAGGAAAAGCAATTGAAGAAACTGCAGCAGTTGTATTGAGACTTTACCATGACCGGAAGCATAAGTGCTCAATGCCAAGAATCTCGAAACGGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgttagcttcaaactaatgcttatgatgtcttaatttgttatctaattacagATGTGACTGGAAAAGCCATAGAAGAGACTGCAGCAGTTGTATTGAGGCTGTACCATGACAGGAAGCACATATGCACCATGCCAAGGATCTCAAAACGCTA
                               tcttaatttgttatct  TA-rich tract