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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatgttcttagttacttgatcttggtttgtagataaaatcactatggttctcattgctatttggcactagaataaaatcatgccatgatccttttgcagGCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTT

Basic information

species Glycine max
transcript GLYMA10G39550.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39550.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0020g03060.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------------------------------------------tgatgttcttagttacttgatcttggtttgtagataaaatcactatggttctcattgctatttggcactagaataaaatcatgccatgatcc---ttttgcagGCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTT
| | | ||||| || | | | | | | ||| | | | ||| || || | | | | | ||| | || | | || ||||||||||| | ||||| || || |||||| | |||||||| || ||||||||||| || |||||||||||||||||||||
gtaagttctttatgatgcgtatgtttatttatgctgataactttctgattagattgtttgcataattactaaatggttctaaaaactattagttgaagttatttagtttagttattcatatattctaattttggaactacttatcaaaaaaaaaaaaattctaatttaactgtgttgtgtatctttcagGCCTCAAACTACTATTGGAACTGCCATGGTTTTATGCCACCGCTTTTTTGTTCGACGTTCGCATGCTTGCCATGATAGATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311128|gb|FK004467.1|FK004467
EST:     CGGTACTCCTATTGTGCCTTCCTTCAGAATCTTGGAATGCGTCTTGAGCT                         GCCTCAAA-CATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGT
genomic: CGGTACTCCTATTGTGCCTTCCTTCAGAATCTTGGAATGCGTCTTGAGCTgtaagacttc ... ccttttgcagGCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGT
EST: gi|192311129|gb|FK004468.1|FK004468
EST:     CGGTACTCCTATTGTGCCTTCCTTCAGAATCTTGGAATGCGTCTTGAGCT                         GCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGT
genomic: CGGTACTCCTATTGTGCCTTCCTTCAGAATCTTGGAATGCGTCTTGAGCTgtaagacttc ... ccttttgcagGCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttctcattgctatttggcactagaataaaatcatgccatgatccttttgcagGCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTT
                                            tccttttgc  CT-rich tract
 tagaataaaatcat  TA-rich tract