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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcacatgttcatacaacataaaagttaccttaactaatcatgaaccaaagttaaactagcctcttattaggtgctcaactttgttgtgccctttttcagGCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAG

Basic information

species Glycine max
transcript GLYMA10G39440.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39440.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0020g03200.t01 (Vitis vinifera), 3'ss of exon 2
gttcacatgttcatacaacataaaagttaccttaacta-atcatgaaccaaagttaaactagcctcttattaggtgctcaactttgttgtgccctttttcagGCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAG
||    |  || ||| | |     | || |   | ||| ||  || | || |        ||  |||    | ||  |    ||   |||   ||    |||||||| || ||||||||||||||||| ||||| ||||  |||||||| |||||||||||||  ||||| ||||| || || |||||  |||| | 
gtctgaaattttatata-cggggtattttcaaaatctatattttgtatcatacccctgtaagtttct----aagtatt----ttccctgttttctacgacagGCTTTAGTCATTGATGGAAAGCTTCAAAGTGCTGAGATTGATGAATTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331927|gb|FK026711.1|FK026711
EST:     CTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAG                         GCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATC
genomic: CTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAGgttcacatgt ... cctttttcagGCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATC
EST: gi|151411311|gb|EV281122.1|EV281122
EST:     CTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAG                         GCGTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATC
genomic: CTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAGgttcacatgt ... cctttttcagGCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaaagttaaactagcctcttattaggtgctcaactttgttgtgccctttttcagGCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAG
                                       ttgtgccctttttc  CT-rich tract
      ttaaacta  TA-rich tract