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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttcttgctgcatctatcagttgtatttatgtgcagattaagggctttacactaacatctgatctttggctggtgttaaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATG

Basic information

species Glycine max
transcript GLYMA10G38940.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38940.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0020g04080.t01 (Vitis vinifera), 3'ss of exon 2
gtaagcttcttg-ctgcatctatcagttgtatttatgtgcagattaagggctttacactaacatctgatctttggctggtgttaaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATG
||| |  | ||  | | |  | |   |   |        |  |||||  | ||  ||||||   ||| || |  ||  |  |||  ||| |||||||||||| || ||||||  |||||||||||||||| ||||||  |||   ||  |||| |||||||||||||  ||||| ||| ||||||||
gtatgtattttaaccgtaaatgttgttcagaccatgaaacccattaaaaggttgtcactaa---ctgctcatgagc--gatttaccttgcagAACTTGGAGTGCTCAGCTGGCGATTAGATGCTGATAACTATGAAACAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525505|gb|BU084316.1|BU084316
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|13252055|gb|BG362958.1|BG362958
EST:     GGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: GGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|254329556|gb|GR839109.1|GR839109
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|120493118|gb|EH221285.1|EH221285
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|19270789|gb|BM887045.1|BM887045
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|6724539|gb|AW308938.1|AW308938
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|9819664|gb|BE555177.1|BE555177
EST:     CCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGAACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGG-ACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|193605793|gb|FK555595.1|FK555595
EST:     AGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: AGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|13482036|gb|BG511379.1|BG511379
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|15813895|gb|BI786170.1|BI786170
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|22522682|gb|BU081493.1|BU081493
EST:     AGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: AGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|14258511|gb|BG881419.1|BG881419
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|8826939|gb|BE210669.1|BE210669
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|254315800|gb|GR825609.1|GR825609
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|213604889|gb|DB960570.1|DB960570
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|13481853|gb|BG511196.1|BG511196
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|6501990|gb|AW203363.1|AW203363
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|192296027|gb|FG989421.1|FG989421
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGACC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|298186912|gb|HO034011.1|HO034011
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCCCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|192318385|gb|FK006505.1|FK006505
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|298174446|gb|HO014591.1|HO014591
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|7042440|gb|AW472334.1|AW472334
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|7041921|gb|AW471815.1|AW471815
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|298167016|gb|HO010455.1|HO010455
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|9902326|gb|BE611294.1|BE611294
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|10844547|gb|BF067878.1|BF067878
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|207796803|gb|GD768865.1|GD768865
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|27426192|gb|CA937712.1|CA937712
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|298170925|gb|HO015901.1|HO015901
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|254339056|gb|GR847773.1|GR847773
EST:     CCCCACCACAAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCACCAC-AAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|207839806|gb|GD810895.1|GD810895
EST:     ACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: ACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|298194017|gb|HO040665.1|HO040665
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACGTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|298198070|gb|HO039609.1|HO039609
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|298184067|gb|HO029280.1|HO029280
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAGATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|13312690|gb|BG406341.1|BG406341
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|7283509|gb|AW596116.1|AW596116
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|6455203|gb|AW185886.1|AW185886
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|4396770|gb|AI495767.1|AI495767
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|4437017|gb|AI522882.1|AI522882
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|208195023|gb|GD992128.1|GD992128
EST:     ACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCNTGAAAATGATC
genomic: ACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|207831080|gb|GD801974.1|GD801974
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|120497212|gb|EH225379.1|EH225379
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|23726129|gb|BU761046.1|BU761046
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|11273900|gb|BF324289.1|BF324289
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
EST: gi|8282521|gb|BE020012.1|BE020012
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagattaagggctttacactaacatctgatctttggctggtgttaaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATG
                                            ttaaattgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcttcttgctgcatctatcagttgtatttatgtgcagattaagggctttacactaacatctgatctttggctggtgttaaattgtagAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA