1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atatcataaacttcctaggtgatacacatctaaggcggtggagtattcttaccaacatattataattaaaaatgtcttttctgctgacatcactcatcagGCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGTGTTACGGTATCAGGTCCAGATGGGTTGGATTTTGGGGTAAAAGGTACCC
species | Glycine max |
transcript | GLYMA10G38900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAG GCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGTEST: gi|298169679|gb|HO021039.1|HO021039
genomic: CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAGgtaacatatt ... cactcatcagGCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAG GCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACGAAATTTGGTEST: gi|151407405|gb|EV277220.1|EV277220
genomic: CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAGgtaacatatt ... cactcatcagGCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAG GCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAGgtaacatatt ... cactcatcagGCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGT
ttcttaccaacatattataattaaaaatgtcttttctgctgacatcactcatcagGCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGTGTTACGGTATCAGGTCCAGATGGGTTGGATTTTGGGGTAAAAGGTACCC
tgctgac putative branch site (score: 2)
aacatattataattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcataaacttcctaggtgatacacatctaaggcggtggagtattcttaccaacatattataattaaaaatgtcttttctgctgacatcactcatcagGCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGTGTTACGGTATCAGGTCCAGATGGGTTGGATTTTGGGGTAAAAGGTACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - cttccta
- - - - - - - - - - -atacaca
- - - - - - - - - - - - - - - - -ggcggtg
- - - - - - - - - - - - - - - - - - - - - - - - - -ccaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaaaaa