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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaccacactatttagaatttaatgtcccaaatttcattatatggcataatacaagtttgcatttaacgtgcttattgatttctttgcttctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGTCTTGTTAGATCTGATGGGGTGTTTGCTGGGGTAAAAGGTACTCCTGAAT

Basic information

species Glycine max
transcript GLYMA10G38890.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9899162|gb|BE608189.1|BE608189
EST:     AGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAG                         GCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: AGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatatt ... ctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: gi|4396293|gb|AI495290.1|AI495290
EST:     CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAG                         GCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatatt ... ctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: gi|9898893|gb|BE607861.1|BE607861
EST:     AGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAG                         GCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: AGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatatt ... ctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: gi|192323154|gb|FK017035.1|FK017035
EST:     CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAG                         GCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatatt ... ctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: gi|151393916|gb|EV263787.1|EV263787
EST:     CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAG                         GCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatatt ... ctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataatacaagtttgcatttaacgtgcttattgatttctttgcttctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGTCTTGTTAGATCTGATGGGGTGTTTGCTGGGGTAAAAGGTACTCCTGAAT
                            tattgat  putative branch site (score: 3)
                                  tttctttgcttctgtc  CT-rich tract
                           ttattgatttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agaccacactatttagaatttaatgtcccaaatttcattatatggcataatacaagtttgcatttaacgtgcttattgatttctttgcttctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGTCTTGTTAGATCTGATGGGGTGTTTGCTGGGGTAAAAGGTACTCCTGAAT

- -ccacact
- - - - - - - - - - - - -tcccaaa
- - - - - - - - - - - - - - - - - - - - - - - - aatacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttat