1 5' 3' | 2 5' 3' | 3 5' 3' |
...atagaaggggggaaaaaagtattgatgttttagttattggttgggtttgttgttggctgatttggaaattggaagtaataaactcttgttttgtttgcagAAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCCTGGTATTGGAAGCAGTGAAGATAATAATGCTGTTAATGTTAGAATTACA
species | Glycine max |
transcript | GLYMA10G38870.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGT AAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCCEST: gi|209708409|gb|BW665384.1|BW665384
genomic: ATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGTgtaagattca ... ttgtttgcagAAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCC
EST: ATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGT AAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCCEST: gi|213595749|gb|DB955925.1|DB955925
genomic: ATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGTgtaagattca ... ttgtttgcagAAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCC
EST: ATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGT AAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCCEST: gi|209729619|gb|BW651907.1|BW651907
genomic: ATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGTgtaagattca ... ttgtttgcagAAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCC
EST: ATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGT AAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCCEST: gi|213591651|gb|DB969751.1|DB969751
genomic: ATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGTgtaagattca ... ttgtttgcagAAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCC
EST: ATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGT AAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCC
genomic: ATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGTgtaagattca ... ttgtttgcagAAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCC
tttgttgttggctgatttggaaattggaagtaataaactcttgttttgtttgcagAAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCCTGGTATTGGAAGCAGTGAAGATAATAATGCTGTTAATGTTAGAATTACA
ggctgat putative branch site (score: 4)
ctcttgttttgttt putative PPT
aagtaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagaaggggggaaaaaagtattgatgttttagttattggttgggtttgttgttggctgatttggaaattggaagtaataaactcttgttttgtttgcagAAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCCTGGTATTGGAAGCAGTGAAGATAATAATGCTGTTAATGTTAGAATTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - gggggga
- - - - - - -aaaaagta
- - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - ggttggg
- - - - - - - - - - - - - - - - - - - - - - - - - tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg