1 5' 3' | 2 5' 3' |
...atgcacctagggtacatacaatttttttctttcttatgcttgagagatagtagttggagggttgatttaaccagtctggacacttgattatgcaatgcagGTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATGTGATGTATCCATTCGAAAAGGATGGTTTTGGCACAAATCAGAATCACCA
species | Glycine max |
transcript | GLYMA10G38670.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTACCATTAATCGAACCTCTCTATCCATTGGAAGTCCAGACATCATTCA GTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATGEST: gi|193417895|gb|FK382201.1|FK382201
genomic: TCTACCATTAATCGAACCTCTCTATCCATTGGAAGTCCAGACATCATTCAgtaagttcta ... tgcaatgcagGTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATG
EST: TCTACCATTAATCGAACCTCTCTATCCATTGGAAGTCCAGACATCATTCA GTACATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATGEST: gi|208289365|gb|GE086680.1|GE086680
genomic: TCTACCATTAATCGAACCTCTCTATCCATTGGAAGTCCAGACATCATTCAgtaagttcta ... tgcaatgcagGTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATG
EST: TCTACCATTAATCGAACCTCTCTATCCATTGGAAGTCCAGACATCATTCA GTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATG
genomic: TCTACCATTAATCGAACCTCTCTATCCATTGGAAGTCCAGACATCATTCAgtaagttcta ... tgcaatgcagGTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATG
gatagtagttggagggttgatttaaccagtctggacacttgattatgcaatgcagGTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATGTGATGTATCCATTCGAAAAGGATGGTTTTGGCACAAATCAGAATCACCA
ttgatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcacctagggtacatacaatttttttctttcttatgcttgagagatagtagttggagggttgatttaaccagtctggacacttgattatgcaatgcagGTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATGTGATGTATCCATTCGAAAAGGATGGTTTTGGCACAAATCAGAATCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
-tgcacct
- - - - - - -acataca
- - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - tggaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttga