1 5' 3' | 2 5' 3' | 3 5' 3' |
...taggatctcatgcaaactattcaaaccccattagtaggctgacctgacgggttatgtttcatttggtttgactcatgtttttttttgcatattaatacagGAAGGTTTACCAGGACTACTGTGATGCCATGAGCAATCTTTCTTTAGGTATAATGGAGCTTCTAGGAATGAGCCTTGGAGTTGGTAGAGCCTGCTTTAGG
species | Glycine max |
transcript | GLYMA10G38600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gacgggttatgtttcatttggtttgactcatgtttttttttgcatattaatacagGAAGGTTTACCAGGACTACTGTGATGCCATGAGCAATCTTTCTTTAGGTATAATGGAGCTTCTAGGAATGAGCCTTGGAGTTGGTAGAGCCTGCTTTAGG
tattaat putative branch site (score: 2)
atgtttttttttgcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggatctcatgcaaactattcaaaccccattagtaggctgacctgacgggttatgtttcatttggtttgactcatgtttttttttgcatattaatacagGAAGGTTTACCAGGACTACTGTGATGCCATGAGCAATCTTTCTTTAGGTATAATGGAGCTTCTAGGAATGAGCCTTGGAGTTGGTAGAGCCTGCTTTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - -tcatgca
- - - - - - - - ctattca
- - - - - - - - - - - - -ccccatt
- - - - - - - - - - - - - - - - - - - ctgacct
- - - - - - - - - - - - - - - - - - - - - - - - -ggttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtttg