1 5' 3' | 2 5' 3' | 3 5' 3' |
...agcttgccaagattttaataaatttttaaaattctgattcttcaaaatttatgtgtttgttgctttataatatttgctcatcttttgaaggctatcccagGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGATACAGTAAATCTCTTAGAATTACATTCCTCAAAGGGGCACAAATACATATG
species | Glycine max |
transcript | GLYMA10G37870.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAGACATG GCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGEST: gi|23057340|gb|BU578014.1|BU578014
genomic: TTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAGACATGgtatgacatt ... gctatcccagGC-AT----G-C-T---ACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAG
EST: TTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAGACATGGCTATCCCAGEST: gi|254314115|gb|GR831744.1|GR831744
genomic: TTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAG--A---C-AT----Ggtatgacatt ... g
EST: TTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAGACATGGCTATCCCAGEST: gi|192324206|gb|FK017937.1|FK017937
genomic: TTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAG--A---C-AT----Ggtatgacatt ... g
EST: TTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAGACATGGCTATCCCAG
genomic: TTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAG--A---C-AT----Ggtatgacatt ... g
aatttatgtgtttgttgctttataatatttgctcatcttttgaaggctatcccagGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGATACAGTAAATCTCTTAGAATTACATTCCTCAAAGGGGCACAAATACATATG
ctatccc CT-rich tract
ttgctttataatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttgccaagattttaataaatttttaaaattctgattcttcaaaatttatgtgtttgttgctttataatatttgctcatcttttgaaggctatcccagGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGATACAGTAAATCTCTTAGAATTACATTCCTCAAAGGGGCACAAATACATATG
-gcttgcc
- - - - - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - - - - - - -tatgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct