Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatttatatcttctcatgctatgcaatttcctgtgttttagattatatttttttgactatgggatggtggaaatgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTG

Basic information

species Glycine max
transcript GLYMA10G37720.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207750999|gb|GD723048.1|GD723048
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|151407029|gb|EV276844.1|EV276844
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193481063|gb|FK444782.1|FK444782
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193720055|gb|FK653939.1|FK653939
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193421658|gb|FK386219.1|FK386219
EST:     GTTAC-GGCCGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: GTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208081615|gb|GD879945.1|GD879945
EST:     ACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207711447|gb|GD693601.1|GD693601
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208136558|gb|GD934156.1|GD934156
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193678476|gb|FK618866.1|FK618866
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208229560|gb|GE022964.1|GE022964
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTGTGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193420490|gb|FK390483.1|FK390483
EST:     GTTAC-GGCCGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: GTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193327736|gb|FK295493.1|FK295493
EST:     CGGGACGATTACAAAAA                         ATAATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagAT-ATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
EST: gi|208116415|gb|GD914502.1|GD914502
EST:     CGGGACGATTACTAAAA                         ATATTCTAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTC-AGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
EST: gi|57574334|gb|CX547309.1|CX547309
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|192295691|gb|FG990545.1|FG990545
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTGTGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207777260|gb|GD750441.1|GD750441
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTGTGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208274082|gb|GE072376.1|GE072376
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|58014941|gb|CX701683.1|CX701683
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctgtgttttagattatatttttttgactatgggatggtggaaatgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTG
                       ttttgac  putative branch site (score: 3)
      tgttttagattatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattatttatatcttctcatgctatgcaatttcctgtgttttagattatatttttttgactatgggatggtggaaatgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA