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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctaaatattctctttctatttcttctccttgaaatactaattatgcttctgctcaatattttacaacctctcagtagtttttttcttcccttgtaacagGTTTCGTATTCACTTTTGATATTCTTTTGTGGAATGTTTATTACAGTGGATGGCCTCAATAAAACTGGAATTCCAAGTGCTCTGTGGGACATAATGGAGC

Basic information

species Glycine max
transcript GLYMA10G37710.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37710.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv16s0050g00780.t01 (Vitis vinifera), 3'ss of exon 1
-------------------gtctaaatattctctttctatttcttctccttgaaa--tactaattatgcttctgctcaatattttacaacctctcagtagtttt-tttcttcccttgtaacagGTTTCGTATTCACTTTTGATATTCTTTTGTGGAATGTTTATTACAGTGGATGGCCTCAATAAAACTGGAATTCCAAGTGCTCTGTGGGACATAATGGAGC
                   |  ||| | || | ||  ||       |  |  | |  |  | || ||   | || |  | |    | || |||| |  |||| | |||||   |||  | ||||| || ||||| |||||||| ||||| || |||||||| |||||||| |||||  |||| ||||||||||| || || ||  | |||||| |||||||||
gtaaaatcagcaatacaatgcttaacttttattttcatacagagattgatgaatacttgattataatttatttgttggagaaagaaaaaactctaaaaagttctatttctcatctttgatcagGTCTCCTATTCCCTTTTGATTTTCTTCTGCGGAATGTTCATTACAGTTGATGGTTTCAACAAAACTGGAATCCCTAGCGCAGTATGGGACTTAATGGAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4306800|gb|AI443956.1|AI443956
EST:     TTGCTCTCATAGTTCTTGATTTCAAAGATGCTACACCATGTTTAGAGAAG                         GTT-CGTATTCACTTTTGATATT
genomic: TTGCTCTCATAGTTCTTGATTTCAAAGATGCTACACCATGTTTAGAGAAGgtctaaatat ... cttgtaacagGTTTCGTATTCACTTTTGATATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttctgctcaatattttacaacctctcagtagtttttttcttcccttgtaacagGTTTCGTATTCACTTTTGATATTCTTTTGTGGAATGTTTATTACAGTGGATGGCCTCAATAAAACTGGAATTCCAAGTGCTCTGTGGGACATAATGGAGC
                                 tttttttcttcccttg  CT-rich tract
        tcaatattttacaa  TA-rich tract