Sequence
atgc intronic sequence ATGC exonic sequencegtaagtcctatactcctatatctatttattatgaaattgggtatataattcaattctgcgtcttgaattcaattgggtatgtctaattttcagGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAG
Basic information
species | Glycine max |
transcript | GLYMA10G37560.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G37560.2 (Glycine max), 3'ss of exon 2
lower sequence: AT4G25700.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagtcctatactcctatatctatttattatgaaattgggtatataattcaattctgcgtcttgaattcaattgggtatgtctaattttcagGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAG
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gtaagtttcaaaacttcatcccaattt-ttctga---ttcataaacaaaaaagttt---ggctgagattt--ttggat--------tattcagGTTGGTATGGAATTCTGGGCAAGATGGGCTCATAGAGCTCTGTGGCACGCTTCTCTATGGAATATGCATGAG
upper sequence: GLYMA10G37560.2 (Glycine max), 3'ss of exon 2
lower sequence: AT5G52570.1 (Arabidopsis thaliana), 3'ss of exon 2
--------gtaagtcctatactcctatatctatttattatgaaat-tgggtatataattcaattctgcgtcttgaattcaattgggtatgtctaattttcagGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAG
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gaaaaaaacgaagttcaataaccagaacaagttaaaccgtaaaaagccaatgtccatgcttattccgattcatttat--attttcgtatatttgaattttagGTTGGGATGGAGTTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGATTCTTTATGGAACATGCATGAG
upper sequence: GLYMA10G37560.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv16s0050g01090.t01 (Vitis vinifera), 3'ss of exon 2
gtaagt-cctatactcctatatcta---------tttattatgaaattgggtatat-aattcaattctgcgtc-------ttgaattcaattgggtatgtctaattttcagGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAG
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gtaagtgcctttttcccttcattttccttcggtttctagttccaaatcatgtttgcgaagctgggtttgaggcgattgcgttgaatcgaaataggtattttttattctcagGTAGGCATGGAGTTCTGGGCGAGATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192307275|gb|FK002367.1|FK002367EST: TTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCT GTGGCTATGGAATTTTGGGCAAGATGGGCTC
genomic: TTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCTgtaagtccta ... taattttcagGTGGCTATGGAATTTTGGGCAAGATGGGCTC
EST:
gi|18733872|gb|BM527861.1|BM527861EST: TTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCT GTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCT
genomic: TTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCTgtaagtccta ... taattttcagGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggtatataattcaattctgcgtcttgaattcaattgggtatgtctaattttcagGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAG
gtctaat putative branch site (score: 3)
ttttc CT-rich tract
tataattcaattct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtaagtcctatactcctatatctatttattatgaaattgggtatataattcaattctgcgtcttgaattcaattgggtatgtctaattttcagGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT