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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgaatgggcctgaacattttttatgtcttttttttcgttgaatggattgtcatgtcagttataactctgttactttgtgttttattattactcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCATTCTTGGGTTACAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAA

Basic information

species Glycine max
transcript GLYMA10G36780.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718971|gb|BW674811.1|BW674811
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|14259532|gb|BG882440.1|BG882440
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209699676|gb|BW655742.1|BW655742
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|7042244|gb|AW472138.1|AW472138
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209717595|gb|BW671491.1|BW671491
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|120532147|gb|EH260280.1|EH260280
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|9564117|gb|BE473626.1|BE473626
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|16347833|gb|BI973428.1|BI973428
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|207691198|gb|GD673206.1|GD673206
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209729583|gb|BW655159.1|BW655159
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|213595132|gb|DB972066.1|DB972066
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|8827243|gb|BE210973.1|BE210973
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209700389|gb|BW660833.1|BW660833
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209711914|gb|BW678993.1|BW678993
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|213601307|gb|DB956559.1|DB956559
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|213603059|gb|DB960392.1|DB960392
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|24136571|gb|BU927081.1|BU927081
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209705363|gb|BW668007.1|BW668007
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|7924415|gb|AW830441.1|AW830441
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209706622|gb|BW676143.1|BW676143
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|213592538|gb|DB961798.1|DB961798
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|213616738|gb|DB971249.1|DB971249
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209716133|gb|BW668659.1|BW668659
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|7684769|gb|AW755417.1|AW755417
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|17963955|gb|BM270698.1|BM270698
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209699780|gb|BW655793.1|BW655793
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209718048|gb|BW671881.1|BW671881
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|213596684|gb|DB956048.1|DB956048
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
EST: gi|209709118|gb|BW658834.1|BW658834
EST:     TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG                         TGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT
genomic: TTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttatt ... actcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtcatgtcagttataactctgttactttgtgttttattattactcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCATTCTTGGGTTACAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAA
              ttataac  putative branch site (score: 2)
                         ttactttgtgttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgaatgggcctgaacattttttatgtcttttttttcgttgaatggattgtcatgtcagttataactctgttactttgtgttttattattactcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCATTCTTGGGTTACAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
-tgaatgg
- - - -ggcctga
- - - - - - - - - - - - - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttgtg