1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctctgatgtcatatatttacaaggtttgtgcttacctgcatatctctgaagtagctctatttgatttcattttttctattttttcctttaacattttcagGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTTAATCACAGTCCTGCCATG
species | Glycine max |
transcript | GLYMA10G35690.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTG GTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGEST: gi|23734175|gb|BU765314.1|BU765314
genomic: TAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGgtaaaaaaaa ... acattttcagGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAG
EST: TAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTG GTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGEST: gi|22525449|gb|BU084260.1|BU084260
genomic: TAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGgtaaaaaaaa ... acattttcagGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAG
EST: TAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTG GTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGEST: gi|23734386|gb|BU765421.1|BU765421
genomic: TAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGgtaaaaaaaa ... acattttcagGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAG
EST: TAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTG GTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGEST: gi|22525312|gb|BU084123.1|BU084123
genomic: TAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGgtaaaaaaaa ... acattttcagGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAG
EST: TAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTG GTTTGCATGTTGTG
genomic: TAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGgtaaaaaaaa ... acattttcagGTTTGCATGTTGTG
ctgaagtagctctatttgatttcattttttctattttttcctttaacattttcagGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTTAATCACAGTCCTGCCATG
ctttaac putative branch site (score: 3)
tttcattttttctatt CT-rich tract
tatttgatttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctgatgtcatatatttacaaggtttgtgcttacctgcatatctctgaagtagctctatttgatttcattttttctattttttcctttaacattttcagGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTTAATCACAGTCCTGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- -tgatgtc
- - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - -acctgca
- - - - - - - - - - - - - - - - - - - - - -ctctgaa